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The map label for this gene is rps17p [H]

Identifier: 156938194

GI number: 156938194

Start: 1268357

End: 1268725

Strand: Direct

Name: rps17p [H]

Synonym: Igni_1407

Alternate gene names: 156938194

Gene position: 1268357-1268725 (Clockwise)

Preceding gene: 156938190

Following gene: 156938195

Centisome position: 97.75

GC content: 55.28

Gene sequence:

>369_bases
GTGGGAGCGGAGGCCTTGTCGGTAAACTTCAGGCACGTGGGAGTAAGGGGGGTCAAGCCCCCGATCGGTACGTGCAACGA
CCCCGAGTGTCCTTGGCACGGACATCTAAAGGTAAGGGGCACCATTTTGGAGGGTGTAGTAGTCAAGAAGAAGATGAATA
AGGCTGTGGTAGTACGCCACGAGTACTTGTACTACAACAGGAAGTACCAGAGGTACGAGAGGAGGAAGAGTAACATCCAC
GCCCGCTTGCCGCCCTGCCTCGCGGACGAGATAAAGGAAGGCGACGTCGTAGTTATTGGAGAGACGCGTCCCCTGGCTAA
GAGTATAAGCTTCGTAGTCCTCGGCAAGAAGGCAGGGGGTGAAGAGTAA

Upstream 100 bases:

>100_bases
GTGACCGGGGTTCGAATCCCCGCCCGGCTACCACTTATCCATTCCCTCCCACAACTACAAAGCCTCAAGCGAGCTTTATT
ATGGTCCACGGGACCCCGCG

Downstream 100 bases:

>100_bases
TGGTAAAGGCGTCAGCGAACAAGTCGCGTAGAAAGGTAGTAACCGGCCTCCAAGTGGGCAGCTACGTGAAGGTTACGGAC
AACAGCGGGGCAAAGGTCGC

Product: SSU ribosomal protein S17P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MGAEALSVNFRHVGVRGVKPPIGTCNDPECPWHGHLKVRGTILEGVVVKKKMNKAVVVRHEYLYYNRKYQRYERRKSNIH
ARLPPCLADEIKEGDVVVIGETRPLAKSISFVVLGKKAGGEE

Sequences:

>Translated_122_residues
MGAEALSVNFRHVGVRGVKPPIGTCNDPECPWHGHLKVRGTILEGVVVKKKMNKAVVVRHEYLYYNRKYQRYERRKSNIH
ARLPPCLADEIKEGDVVVIGETRPLAKSISFVVLGKKAGGEE
>Mature_121_residues
GAEALSVNFRHVGVRGVKPPIGTCNDPECPWHGHLKVRGTILEGVVVKKKMNKAVVVRHEYLYYNRKYQRYERRKSNIHA
RLPPCLADEIKEGDVVVIGETRPLAKSISFVVLGKKAGGEE

Specific function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA [H]

COG id: COG0186

COG function: function code J; Ribosomal protein S17

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S17P family [H]

Homologues:

Organism=Homo sapiens, GI4506681, Length=126, Percent_Identity=42.8571428571429, Blast_Score=103, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17542016, Length=117, Percent_Identity=46.1538461538462, Blast_Score=99, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6320228, Length=98, Percent_Identity=38.7755102040816, Blast_Score=81, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6319522, Length=98, Percent_Identity=38.7755102040816, Blast_Score=81, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24652924, Length=109, Percent_Identity=43.1192660550459, Blast_Score=97, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24652922, Length=108, Percent_Identity=45.3703703703704, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000266
- InterPro:   IPR019978
- ProDom:   PD001295 [H]

Pfam domain/function: PF00366 Ribosomal_S17 [H]

EC number: NA

Molecular weight: Translated: 13691; Mature: 13560

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAEALSVNFRHVGVRGVKPPIGTCNDPECPWHGHLKVRGTILEGVVVKKKMNKAVVVRH
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCEEEEEE
EYLYYNRKYQRYERRKSNIHARLPPCLADEIKEGDVVVIGETRPLAKSISFVVLGKKAGG
EHEEECCHHHHHHHHHCCCEEECCCHHHHHCCCCCEEEEECCCCCCCCEEEEEEECCCCC
EE
CC
>Mature Secondary Structure 
GAEALSVNFRHVGVRGVKPPIGTCNDPECPWHGHLKVRGTILEGVVVKKKMNKAVVVRH
CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCEEEEEE
EYLYYNRKYQRYERRKSNIHARLPPCLADEIKEGDVVVIGETRPLAKSISFVVLGKKAGG
EHEEECCHHHHHHHHHCCCEEECCCHHHHHCCCCCEEEEECCCCCCCCEEEEEEECCCCC
EE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]