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The map label for this gene is rpl30p

Identifier: 156938062

GI number: 156938062

Start: 1135878

End: 1136357

Strand: Reverse

Name: rpl30p

Synonym: Igni_1275

Alternate gene names: 156938062

Gene position: 1136357-1135878 (Counterclockwise)

Preceding gene: 156938063

Following gene: 156938061

Centisome position: 87.58

GC content: 57.5

Gene sequence:

>480_bases
ATGAGCAAGAAGTTGTACCTAATTATTAGGATAAAGGGAGAGCCTGACGCGCACCCGGACGTGAGGAAGACTCTGGAGAA
CTTGAGGCTGTTGAGGAGGTATGCGGCCGTGGTCTACCCGGCGGACTTGCCGGGCCTCGAAGGCATGCTGAGGAAGGCAC
AAGCGTGGATAACTTGGGGCGAGATAAGGAAGGACGTGCTGGCGAAGCTCTTGGAGGTTAGGGGGAGGGCGCCAGGCGAC
AAGAAGCTCACCCCAGAGTACATAAAGGAGAAGTTCGGGGTGAACAGCTTCGAAGAGCTCGCGGAGAAGATAATTAACGG
CGAGGTGGTGCTTCACAAGCAGGAGGCGATCAAGCCCTTCTTCAGGCTACACCCGCCCAGGGGCGGCTTCAAGAAGAGCA
TCAAGAAGCCTTACCGCTCCGGAGGGGAGGCCGGCTACCGCGGGGAGGCCATAAACGAACTGGTTTTGAGGATGCTCTGA

Upstream 100 bases:

>100_bases
ACCCACAACTTCGCCAAGGCTACCTTCAACGCGCTGAAGCAGACTTACAAGTTCCTCGCCCCGTGGGACTGGGTACAACA
GCAGTGAGGGGTGTTGAGGG

Downstream 100 bases:

>100_bases
CCACAAAGGCCTAAAACATTGGAAAGCCCGTCGGCCGGGGTGAGTAACTTTGGTGGTAAGGCGTAGGAGGAAGAGCAGGA
AGCTGAGGGGAAGGACCAGA

Product: 50S ribosomal protein L30P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSKKLYLIIRIKGEPDAHPDVRKTLENLRLLRRYAAVVYPADLPGLEGMLRKAQAWITWGEIRKDVLAKLLEVRGRAPGD
KKLTPEYIKEKFGVNSFEELAEKIINGEVVLHKQEAIKPFFRLHPPRGGFKKSIKKPYRSGGEAGYRGEAINELVLRML

Sequences:

>Translated_159_residues
MSKKLYLIIRIKGEPDAHPDVRKTLENLRLLRRYAAVVYPADLPGLEGMLRKAQAWITWGEIRKDVLAKLLEVRGRAPGD
KKLTPEYIKEKFGVNSFEELAEKIINGEVVLHKQEAIKPFFRLHPPRGGFKKSIKKPYRSGGEAGYRGEAINELVLRML
>Mature_158_residues
SKKLYLIIRIKGEPDAHPDVRKTLENLRLLRRYAAVVYPADLPGLEGMLRKAQAWITWGEIRKDVLAKLLEVRGRAPGDK
KLTPEYIKEKFGVNSFEELAEKIINGEVVLHKQEAIKPFFRLHPPRGGFKKSIKKPYRSGGEAGYRGEAINELVLRML

Specific function: Unknown

COG id: COG1841

COG function: function code J; Ribosomal protein L30/L7E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30_IGNH4 (A8ABZ9)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435858.1
- ProteinModelPortal:   A8ABZ9
- SMR:   A8ABZ9
- STRING:   A8ABZ9
- GeneID:   5562947
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_1275
- eggNOG:   arNOG07717
- HOGENOM:   HBG297538
- OMA:   CIPYLKP
- ProtClustDB:   PRK06049
- BioCyc:   IHOS453591:IGNI_1275-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01371_A
- InterPro:   IPR005997
- InterPro:   IPR023106
- InterPro:   IPR016082
- Gene3D:   G3DSA:1.10.15.30
- Gene3D:   G3DSA:3.30.1390.20
- TIGRFAMs:   TIGR01309

Pfam domain/function: PF00327 Ribosomal_L30; SSF55129 Ribosomal_L30

EC number: NA

Molecular weight: Translated: 18191; Mature: 18060

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS00634 RIBOSOMAL_L30

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKLYLIIRIKGEPDAHPDVRKTLENLRLLRRYAAVVYPADLPGLEGMLRKAQAWITWG
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EIRKDVLAKLLEVRGRAPGDKKLTPEYIKEKFGVNSFEELAEKIINGEVVLHKQEAIKPF
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCEEEEHHHHHHHH
FRLHPPRGGFKKSIKKPYRSGGEAGYRGEAINELVLRML
HHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure 
SKKLYLIIRIKGEPDAHPDVRKTLENLRLLRRYAAVVYPADLPGLEGMLRKAQAWITWG
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EIRKDVLAKLLEVRGRAPGDKKLTPEYIKEKFGVNSFEELAEKIINGEVVLHKQEAIKPF
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCEEEEHHHHHHHH
FRLHPPRGGFKKSIKKPYRSGGEAGYRGEAINELVLRML
HHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA