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The map label for this gene is rpl15p [H]

Identifier: 156938061

GI number: 156938061

Start: 1135382

End: 1135828

Strand: Reverse

Name: rpl15p [H]

Synonym: Igni_1274

Alternate gene names: 156938061

Gene position: 1135828-1135382 (Counterclockwise)

Preceding gene: 156938062

Following gene: 156938060

Centisome position: 87.54

GC content: 59.06

Gene sequence:

>447_bases
TTGGTGGTAAGGCGTAGGAGGAAGAGCAGGAAGCTGAGGGGAAGGACCAGAACTATGGGCTGGGGCAGGATAGGCCAGCA
CCGCAGGAGCGGCGCGCGCGGAGGGTTCGGCCGCGCCGGCATGCACAAGCACTTCTGGACGTGGGTCACCGCCAAGAGCC
CGGGCTACTTCGGTAAGTACGGCTTCCACTTGCCCCCCGAGGACAGAGTGGAAATTAAGGAAATCAACGTGGGAGAGCTC
GACGAACTCGCTAGGAAACTGAACACAAACGTGATAGACTTAGCAGCCATGGGCTACAACAAGCTGTTAGGCTTCGGGAA
GGTCAAGGGGAGCTACACTGTAATAGTTGCGTTCGCGAGCAAGAAGGCCATTCAAAAGGTCAAGGCCGCCGGGGGGAAGG
TGGTAACCCCCGATGGCGAGGAGCTGGAAGTGGAGGCCGCTTCTTAG

Upstream 100 bases:

>100_bases
GCCGGCTACCGCGGGGAGGCCATAAACGAACTGGTTTTGAGGATGCTCTGACCACAAAGGCCTAAAACATTGGAAAGCCC
GTCGGCCGGGGTGAGTAACT

Downstream 100 bases:

>100_bases
CTCTTTCTTATTGGTATCCTTGGCGCCCTTCTCGACGTCCGTGCCTTGCTTCAAGCTACCCGGCCTTGAGAGCGTGGCCT
TCTGGATAAGCACTACTATG

Product: 50S ribosomal protein L15P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MVVRRRRKSRKLRGRTRTMGWGRIGQHRRSGARGGFGRAGMHKHFWTWVTAKSPGYFGKYGFHLPPEDRVEIKEINVGEL
DELARKLNTNVIDLAAMGYNKLLGFGKVKGSYTVIVAFASKKAIQKVKAAGGKVVTPDGEELEVEAAS

Sequences:

>Translated_148_residues
MVVRRRRKSRKLRGRTRTMGWGRIGQHRRSGARGGFGRAGMHKHFWTWVTAKSPGYFGKYGFHLPPEDRVEIKEINVGEL
DELARKLNTNVIDLAAMGYNKLLGFGKVKGSYTVIVAFASKKAIQKVKAAGGKVVTPDGEELEVEAAS
>Mature_148_residues
MVVRRRRKSRKLRGRTRTMGWGRIGQHRRSGARGGFGRAGMHKHFWTWVTAKSPGYFGKYGFHLPPEDRVEIKEINVGEL
DELARKLNTNVIDLAAMGYNKLLGFGKVKGSYTVIVAFASKKAIQKVKAAGGKVVTPDGEELEVEAAS

Specific function: Binds to the 23S rRNA [H]

COG id: COG0200

COG function: function code J; Ribosomal protein L15

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L15P family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17509867, Length=141, Percent_Identity=38.2978723404255, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17136880, Length=144, Percent_Identity=41.6666666666667, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001196
- InterPro:   IPR021131 [H]

Pfam domain/function: PF00828 Ribosomal_L18e [H]

EC number: NA

Molecular weight: Translated: 16456; Mature: 16456

Theoretical pI: Translated: 11.29; Mature: 11.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVRRRRKSRKLRGRTRTMGWGRIGQHRRSGARGGFGRAGMHKHFWTWVTAKSPGYFGKY
CCCCCCHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
GFHLPPEDRVEIKEINVGELDELARKLNTNVIDLAAMGYNKLLGFGKVKGSYTVIVAFAS
CCCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCEEEEEEECC
KKAIQKVKAAGGKVVTPDGEELEVEAAS
HHHHHHHHHCCCEEECCCCCEEEEEECC
>Mature Secondary Structure
MVVRRRRKSRKLRGRTRTMGWGRIGQHRRSGARGGFGRAGMHKHFWTWVTAKSPGYFGKY
CCCCCCHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
GFHLPPEDRVEIKEINVGELDELARKLNTNVIDLAAMGYNKLLGFGKVKGSYTVIVAFAS
CCCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCEEEEEEECC
KKAIQKVKAAGGKVVTPDGEELEVEAAS
HHHHHHHHHCCCEEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA