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The map label for this gene is rsmB [H]

Identifier: 156937691

GI number: 156937691

Start: 799803

End: 800960

Strand: Reverse

Name: rsmB [H]

Synonym: Igni_0900

Alternate gene names: 156937691

Gene position: 800960-799803 (Counterclockwise)

Preceding gene: 156937693

Following gene: 156937687

Centisome position: 61.73

GC content: 60.1

Gene sequence:

>1158_bases
ATGGGGAATTACTCCCGGACTGAGGGAGTGAGGACAGCTTACCCGGCCGACGGGAGGTTCTCCTACGGCAAACGGATCTT
GGAGGAGCTGGGAGAACAGTTCGACCTCCCCGAGCTCTTCGAGGCGCTCCGGACCCCGGGCAAGAGGCTCTGCGCGAGGG
TTAACTTGTTGAGGGGCTCTCCGGAGGAGGTCTTGGAGGAGCTCGAGAGGACCGGCTACGAGCCCGAGACCCCCTACCCC
TACGAGGAGCTGGTCTGCGTGCGGGTGGAGGGGCCCTTCGAAGTCCCCTTGACCGACGCGGTCGTGGTGGCGGACAAGAG
GGCCGCGGAGAGCGTCTTAATGGGGGCCGACCTCTACGCCCCGGGCCTCTTGGAGGCTAAGGGGGTCAAGGCGGGAGAGC
CCGTGACCGTCTTAGCGGAGAAGACCTTGGAGCCCGTGGGCTTCGGGAGGGCCCTCTTCGAAGGGGAACCCCCGCGGAGG
GGAAAGGTCGTCGAAACGGTAGTAACTAAGTTCAAGGCCCCTAAGTTCAGAGAGCTGAAGTCCTTCGAGAAGGGCTTGAT
CTACCCCCAGAGCGCTCCGGCAGTGGCCGCGGTGAGGGCGCTGGAGCCCGAGGGGTTGGTGGTCGACATGAACGCCGCCC
CGGGAGGCAAGGCCTTCCACGCGTACGAGCTGTTGAGGGGGAAGGGGAAGGTAATAGCTTTCGACATCTCTAAGAAGAGA
ATAAGCAAAATGATGGAAGAGATGAGGAGGCTCGGGCACTCCTTCGAGGTCGTCAGGGCGGACTCGAGGTACCTAGACTT
GGACTTCCCGCACTTGGTGGGGAAGGCGGACAGGGTGATAGTAGACCCCCCGTGCACAGCAATAGGCGTGATACCGAAGG
TGTGGGACGTCAAGAAGGACGAAGATATGATAAACGCGTTCGAGTACCAAAAACAGTTCGTCAAGGTGGCCTACAAATTG
TTGAAGAAAGGGGGTTTAATGCTCTACTCCACGTGTACCTTAACTAAGACAGAGAACGAGCGGGTGGTGGAGTTCGCGGA
GGAGATGGGCTTCGAAGTGGTCGAGAAGGACACCCCTTGGGGGAAGACCCCAGTTAAGGTGAGCCCGAGCGTGCACGGGG
AGCCGGGCTTCTTTATCGCAATACTCAAGAAAAAGTGA

Upstream 100 bases:

>100_bases
CTACCCATCCCTTAACCTCGTCGCTGTTCACGGCCTCTACGTAAGCCATCCTTTTTACCTCGTATCGGCATCACGCCAGC
GAGGCTTTAGAAGCTCCCGG

Downstream 100 bases:

>100_bases
GTTCAGTAACCGAAGAGCTTCTTGAGCATCGCTTGCTCCCACGCGTCCTTCCTCTTGGTGTACTCCTCCTTGGGCTCCGG
GTCCTTGCTCCCCTTGGGCT

Product: Fmu (Sun) domain-containing protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MGNYSRTEGVRTAYPADGRFSYGKRILEELGEQFDLPELFEALRTPGKRLCARVNLLRGSPEEVLEELERTGYEPETPYP
YEELVCVRVEGPFEVPLTDAVVVADKRAAESVLMGADLYAPGLLEAKGVKAGEPVTVLAEKTLEPVGFGRALFEGEPPRR
GKVVETVVTKFKAPKFRELKSFEKGLIYPQSAPAVAAVRALEPEGLVVDMNAAPGGKAFHAYELLRGKGKVIAFDISKKR
ISKMMEEMRRLGHSFEVVRADSRYLDLDFPHLVGKADRVIVDPPCTAIGVIPKVWDVKKDEDMINAFEYQKQFVKVAYKL
LKKGGLMLYSTCTLTKTENERVVEFAEEMGFEVVEKDTPWGKTPVKVSPSVHGEPGFFIAILKKK

Sequences:

>Translated_385_residues
MGNYSRTEGVRTAYPADGRFSYGKRILEELGEQFDLPELFEALRTPGKRLCARVNLLRGSPEEVLEELERTGYEPETPYP
YEELVCVRVEGPFEVPLTDAVVVADKRAAESVLMGADLYAPGLLEAKGVKAGEPVTVLAEKTLEPVGFGRALFEGEPPRR
GKVVETVVTKFKAPKFRELKSFEKGLIYPQSAPAVAAVRALEPEGLVVDMNAAPGGKAFHAYELLRGKGKVIAFDISKKR
ISKMMEEMRRLGHSFEVVRADSRYLDLDFPHLVGKADRVIVDPPCTAIGVIPKVWDVKKDEDMINAFEYQKQFVKVAYKL
LKKGGLMLYSTCTLTKTENERVVEFAEEMGFEVVEKDTPWGKTPVKVSPSVHGEPGFFIAILKKK
>Mature_384_residues
GNYSRTEGVRTAYPADGRFSYGKRILEELGEQFDLPELFEALRTPGKRLCARVNLLRGSPEEVLEELERTGYEPETPYPY
EELVCVRVEGPFEVPLTDAVVVADKRAAESVLMGADLYAPGLLEAKGVKAGEPVTVLAEKTLEPVGFGRALFEGEPPRRG
KVVETVVTKFKAPKFRELKSFEKGLIYPQSAPAVAAVRALEPEGLVVDMNAAPGGKAFHAYELLRGKGKVIAFDISKKRI
SKMMEEMRRLGHSFEVVRADSRYLDLDFPHLVGKADRVIVDPPCTAIGVIPKVWDVKKDEDMINAFEYQKQFVKVAYKLL
KKGGLMLYSTCTLTKTENERVVEFAEEMGFEVVEKDTPWGKTPVKVSPSVHGEPGFFIAILKKK

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=221, Percent_Identity=30.316742081448, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI76150623, Length=221, Percent_Identity=30.316742081448, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI32698918, Length=374, Percent_Identity=26.2032085561497, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI301336155, Length=198, Percent_Identity=29.7979797979798, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI39995082, Length=198, Percent_Identity=29.7979797979798, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI2367212, Length=217, Percent_Identity=32.258064516129, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI87081985, Length=221, Percent_Identity=28.9592760180996, Blast_Score=81, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17536757, Length=210, Percent_Identity=30.4761904761905, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6324268, Length=222, Percent_Identity=30.1801801801802, Blast_Score=94, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6319447, Length=309, Percent_Identity=26.2135922330097, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24668781, Length=385, Percent_Identity=30.1298701298701, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI21356513, Length=329, Percent_Identity=30.0911854103343, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI22024126, Length=221, Percent_Identity=27.6018099547511, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 42876; Mature: 42745

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNYSRTEGVRTAYPADGRFSYGKRILEELGEQFDLPELFEALRTPGKRLCARVNLLRGS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCC
PEEVLEELERTGYEPETPYPYEELVCVRVEGPFEVPLTDAVVVADKRAAESVLMGADLYA
HHHHHHHHHHCCCCCCCCCCHHHEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCC
PGLLEAKGVKAGEPVTVLAEKTLEPVGFGRALFEGEPPRRGKVVETVVTKFKAPKFRELK
CCCCCCCCCCCCCCEEEEEHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHH
SFEKGLIYPQSAPAVAAVRALEPEGLVVDMNAAPGGKAFHAYELLRGKGKVIAFDISKKR
HHHHCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEECCHHH
ISKMMEEMRRLGHSFEVVRADSRYLDLDFPHLVGKADRVIVDPPCTAIGVIPKVWDVKKD
HHHHHHHHHHCCCCEEEEECCCCEEECCCHHHHCCCCEEEECCCCHHHCCCCHHHCCCCC
EDMINAFEYQKQFVKVAYKLLKKGGLMLYSTCTLTKTENERVVEFAEEMGFEVVEKDTPW
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCHHHHHHHHHCCCEEEECCCCC
GKTPVKVSPSVHGEPGFFIAILKKK
CCCCEEECCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
GNYSRTEGVRTAYPADGRFSYGKRILEELGEQFDLPELFEALRTPGKRLCARVNLLRGS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCC
PEEVLEELERTGYEPETPYPYEELVCVRVEGPFEVPLTDAVVVADKRAAESVLMGADLYA
HHHHHHHHHHCCCCCCCCCCHHHEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCC
PGLLEAKGVKAGEPVTVLAEKTLEPVGFGRALFEGEPPRRGKVVETVVTKFKAPKFRELK
CCCCCCCCCCCCCCEEEEEHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHH
SFEKGLIYPQSAPAVAAVRALEPEGLVVDMNAAPGGKAFHAYELLRGKGKVIAFDISKKR
HHHHCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEECCHHH
ISKMMEEMRRLGHSFEVVRADSRYLDLDFPHLVGKADRVIVDPPCTAIGVIPKVWDVKKD
HHHHHHHHHHCCCCEEEEECCCCEEECCCHHHHCCCCEEEECCCCHHHCCCCHHHCCCCC
EDMINAFEYQKQFVKVAYKLLKKGGLMLYSTCTLTKTENERVVEFAEEMGFEVVEKDTPW
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCHHHHHHHHHCCCEEEECCCCC
GKTPVKVSPSVHGEPGFFIAILKKK
CCCCEEECCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]