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The map label for this gene is 156937557

Identifier: 156937557

GI number: 156937557

Start: 684991

End: 685185

Strand: Reverse

Name: 156937557

Synonym: Igni_0764

Alternate gene names: NA

Gene position: 685185-684991 (Counterclockwise)

Preceding gene: 156937558

Following gene: 156937550

Centisome position: 52.81

GC content: 49.74

Gene sequence:

>195_bases
ATGAAGTTCTTAATGAAGAAGTGTGTGAGGTGTGGCAGGTACACCTTCAAGGACGTCTGCCCGGTGTGTAACGGACAGAC
GACAGTACCCCACCCGCCGAGGTTCAGTCCAGAAGACAAGTACGTTAAGTACAGAGTCCTAGCCAAGCTTACCAAGGAAC
GTCCTTCAAGTGAAGGTAGTACGCTATCAAGTTAG

Upstream 100 bases:

>100_bases
AGACCGCGGGGAAGACGCTCGAGGCCGTGGGAGAGAAGATCCTTGAAGAGGCGAAAGCAGAGGGGTTAGAAGTGGCTAAG
TTCGAACAGGTGGGAAGGAA

Downstream 100 bases:

>100_bases
TCAGCTTGTGTAGTATAACTATTATTATTGCACCCAGCGCCACCAGCTTCCACTCGGGCTTCCACCCGACTGCAATCATG
AAGGCAGTAGCTCCTACGTA

Product: nucleolar RNA-binding protein Nop10p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MKFLMKKCVRCGRYTFKDVCPVCNGQTTVPHPPRFSPEDKYVKYRVLAKLTKERPSSEGSTLSS

Sequences:

>Translated_64_residues
MKFLMKKCVRCGRYTFKDVCPVCNGQTTVPHPPRFSPEDKYVKYRVLAKLTKERPSSEGSTLSS
>Mature_64_residues
MKFLMKKCVRCGRYTFKDVCPVCNGQTTVPHPPRFSPEDKYVKYRVLAKLTKERPSSEGSTLSS

Specific function: Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA

COG id: COG2260

COG function: function code J; Predicted Zn-ribbon RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NOP10 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NOP10_IGNH4 (A8AAJ4)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001435353.1
- ProteinModelPortal:   A8AAJ4
- SMR:   A8AAJ4
- STRING:   A8AAJ4
- GeneID:   5562685
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_0764
- eggNOG:   arNOG14058
- HOGENOM:   HBG498094
- OMA:   PHPPRFS
- BioCyc:   IHOS453591:IGNI_0764-MONOMER
- HAMAP:   MF_00803
- InterPro:   IPR007264
- PANTHER:   PTHR13305

Pfam domain/function: PF04135 Nop10p

EC number: NA

Molecular weight: Translated: 7328; Mature: 7328

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
6.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
9.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLMKKCVRCGRYTFKDVCPVCNGQTTVPHPPRFSPEDKYVKYRVLAKLTKERPSSEGS
CHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
TLSS
CCCC
>Mature Secondary Structure
MKFLMKKCVRCGRYTFKDVCPVCNGQTTVPHPPRFSPEDKYVKYRVLAKLTKERPSSEGS
CHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
TLSS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA