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The map label for this gene is 156937490

Identifier: 156937490

GI number: 156937490

Start: 629845

End: 630540

Strand: Reverse

Name: 156937490

Synonym: Igni_0697

Alternate gene names: NA

Gene position: 630540-629845 (Counterclockwise)

Preceding gene: 156937491

Following gene: 156937489

Centisome position: 48.6

GC content: 48.42

Gene sequence:

>696_bases
TTGAAGCGTAATTACGTGGTCGCCCGGTACGAGTACAAGGGCCACAAGTTCGAAATCTTGGTGGACCCCGATAAAGCTCT
AGAACTCAAGTCCGGTAAGCAAATACCGATAGAAGAGGTTCTAATTGCTGATACGATATACAAGGACGTGGGCAGCGGCG
ACAGAGTCTCCCCAGAGACTTTAAAGAAGGTGTTTGGAACGGACGACGTGAAGAAGGTTGCTTTAGAGATAATCACTAAA
GGCGAGATACAGCTCACGGCCGAACAGAGGAGGAAAATTATAGAGCAGAAGAAACGTCAAATAATTAACTACATTGCCAA
GAACGCGATAGATCCCCAGACCAAACTCCCGATTCCTCCGGCGAGGATAGAGGCGGCCATGGAGAGGGCCAAGGTCGGCG
TAGACCCCTACAAGAGCGTGGAAGAACAAGCTATGCAGATAGTCAGGGCCATATCTAGAATAATTCCAATCAAGATAGCG
AAGGCCATTATTCAAGTTAAAATACCTCCCAAGTACTCGGGCCGCGCTTACTCTGAACTCAAGAAGCTAGGGGAGATCAA
GTCGATGGATTGGAAGTCGGACGGAAGCTTGGTCGCTGAAATAGAGATACCGGCCGGTTTGCAAGGCGAGATAATGGATA
AGCTCGCGAAGATGACAAAGGGGGAAGCTGAGGTTAAAGTGCTGTACACATCTTAA

Upstream 100 bases:

>100_bases
GGTTTGATGGTTAAAAAGGGGATCCAAGTAGGCAGGATCGGGCTGCCGAAGAGGGCTAAACTTCAATTCCGCTCGGCGAG
GGTAAGAGAGGGAAGACCTC

Downstream 100 bases:

>100_bases
GAAGGGGTAGGTATGAATGATACTGGCCGTCAACGCGAAGGTATATTACCCATATTCCTTCGGCGCACGTCTACTGAGGT
TAGCTAGGGCTATAGACAAG

Product: RNA-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKRNYVVARYEYKGHKFEILVDPDKALELKSGKQIPIEEVLIADTIYKDVGSGDRVSPETLKKVFGTDDVKKVALEIITK
GEIQLTAEQRRKIIEQKKRQIINYIAKNAIDPQTKLPIPPARIEAAMERAKVGVDPYKSVEEQAMQIVRAISRIIPIKIA
KAIIQVKIPPKYSGRAYSELKKLGEIKSMDWKSDGSLVAEIEIPAGLQGEIMDKLAKMTKGEAEVKVLYTS

Sequences:

>Translated_231_residues
MKRNYVVARYEYKGHKFEILVDPDKALELKSGKQIPIEEVLIADTIYKDVGSGDRVSPETLKKVFGTDDVKKVALEIITK
GEIQLTAEQRRKIIEQKKRQIINYIAKNAIDPQTKLPIPPARIEAAMERAKVGVDPYKSVEEQAMQIVRAISRIIPIKIA
KAIIQVKIPPKYSGRAYSELKKLGEIKSMDWKSDGSLVAEIEIPAGLQGEIMDKLAKMTKGEAEVKVLYTS
>Mature_231_residues
MKRNYVVARYEYKGHKFEILVDPDKALELKSGKQIPIEEVLIADTIYKDVGSGDRVSPETLKKVFGTDDVKKVALEIITK
GEIQLTAEQRRKIIEQKKRQIINYIAKNAIDPQTKLPIPPARIEAAMERAKVGVDPYKSVEEQAMQIVRAISRIIPIKIA
KAIIQVKIPPKYSGRAYSELKKLGEIKSMDWKSDGSLVAEIEIPAGLQGEIMDKLAKMTKGEAEVKVLYTS

Specific function: Unknown

COG id: COG1500

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SDO1/SBDS family [H]

Homologues:

Organism=Homo sapiens, GI28416940, Length=228, Percent_Identity=30.2631578947368, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI25144459, Length=229, Percent_Identity=29.2576419213974, Blast_Score=101, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6323050, Length=167, Percent_Identity=28.1437125748503, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24659572, Length=216, Percent_Identity=24.0740740740741, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009022
- InterPro:   IPR018978
- InterPro:   IPR018023
- InterPro:   IPR019783
- InterPro:   IPR002140 [H]

Pfam domain/function: PF01172 SBDS; PF09377 SBDS_C [H]

EC number: NA

Molecular weight: Translated: 25946; Mature: 25946

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNYVVARYEYKGHKFEILVDPDKALELKSGKQIPIEEVLIADTIYKDVGSGDRVSPET
CCCCEEEEEEEECCCEEEEEECCCHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHH
LKKVFGTDDVKKVALEIITKGEIQLTAEQRRKIIEQKKRQIINYIAKNAIDPQTKLPIPP
HHHHHCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
ARIEAAMERAKVGVDPYKSVEEQAMQIVRAISRIIPIKIAKAIIQVKIPPKYSGRAYSEL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHH
KKLGEIKSMDWKSDGSLVAEIEIPAGLQGEIMDKLAKMTKGEAEVKVLYTS
HHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEC
>Mature Secondary Structure
MKRNYVVARYEYKGHKFEILVDPDKALELKSGKQIPIEEVLIADTIYKDVGSGDRVSPET
CCCCEEEEEEEECCCEEEEEECCCHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHH
LKKVFGTDDVKKVALEIITKGEIQLTAEQRRKIIEQKKRQIINYIAKNAIDPQTKLPIPP
HHHHHCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
ARIEAAMERAKVGVDPYKSVEEQAMQIVRAISRIIPIKIAKAIIQVKIPPKYSGRAYSEL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHH
KKLGEIKSMDWKSDGSLVAEIEIPAGLQGEIMDKLAKMTKGEAEVKVLYTS
HHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]