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The map label for this gene is xerD [C]

Identifier: 156937341

GI number: 156937341

Start: 492529

End: 494343

Strand: Reverse

Name: xerD [C]

Synonym: Igni_0548

Alternate gene names: 156937341

Gene position: 494343-492529 (Counterclockwise)

Preceding gene: 156937344

Following gene: 156937340

Centisome position: 38.1

GC content: 56.58

Gene sequence:

>1815_bases
ATGAAGGAGCCGCCCCTCAAGCCGTCGCCGGACGAGCCCCTCTCGTCTGCGATAGAGGAATACCTAGAATTCATGGAGGT
TTCGGGCGCAAACAAGAAAACCTTGAAGAGCTATAGATCCGCGCTCAAGGACTTCTTGAGCGTGGTGGGCGACAAGAGGG
TCGGCGAGGTCAAGTACGAGGACTACGTCAAGTGGGTGAGGAAGAGGATGAAGGAGGGTTTCCCGCGGAGCGTCAAGAAG
GACAAGAGGGCACAACAGACTACCTTGCACTACTACAGCTTGTTCGTCAGGAACTTCCTCAAGTGGTTGGGCTTGGAGGG
CTTGCCGGCGGTCCCCAAGCCTAGGAAGGACAGCGTAGAGGCCTTGAAGCCCGAAGAGGTGGCGGCGTTGCTCCAAGCGG
CCTACGAAGACCCTATAGACTTCCTAATAGTCAGCTTGCTCCTTGAGACAGGCTTACGGGCCTCCGAGGCCCTTAACGTA
ACTTTGGACAAGGTGGACTTCCGCCGGAGGCAGATAGCGGTTAGGGGTAAGTACGGCAAGGAGCGCGTGGTGTTCTACGG
CCCTCTGACGGAGGAGGCCCTCCGGAGGGCTTGGAGCTATATTGCTCCCTCGGGAAGGCTAGTTCCGCTCAGCTATCAAG
CGCTGTACAAGAGGCTCAAGAGGTTAGCTAAGAAGGCGGGCTTGCCGGAGCACAAGCTCCACCCCCACGCGCTGAGGCAC
ACCTTCGCCACGGAGGCGCTTAGGAGGGGGATGAGCTTGCCCGCCGTGCAAAGGCTCTTAGGCCACAGCGACATAAAAAC
TACTCAAATCTACTTGCACTTGTTAGTGGACGACGTGAGGAACCAGTACTTCCAAGCGTTCTCAGGCGGCCAGCATGGCG
TAGACTTGGGAGGCCACTATCACGCCGACTATAGGGGGTATCAGGTTGACGGCGGTGTGTATTATGAACTTGCCGGCGGT
CTGCAAGGCGGTGTAGGTCACGACCCAAGCGGTTATGAATACTATAATAGCCAGTATCAGTTTCAAATCCATCACGATCA
CCCCCTTAGTGAGAGAGCACGAGTAAGTAAGTTACCACCAGGGCCACCAACATCGATACCGTCGACGAGAGGCCAGACGT
CAGCGCGTCAACCGACATATCTATCACAGGGCGCAACAGCTGGAGCACGGCAGCGGTCACCAACATCGCCAGCAGGCCGG
CCACCAGCGCTGCCAGCGCTGCCACCACGTTCACCAAGTCCCGCTTCCCGAAGCCCACCTCCGCCCATGCCTTATAAAAA
CGAGGGCGTCGGCGCAGTAGGTACTGCGGTTGCTGGCGGCCCTATACTACGTCCTCAAGGGAGACCCCTACAAGGCCTTG
AAGGAGGACTTGGAATCCCTGAAGAAGGCGAAGTTGCTTACAGAGGATTTGAGGATTACGGAGAAGGGAATGGAGCTTAT
TCAACAACTGATTTCCAAGCCCATATCTTTGAAAGGCAAGGTGGTGAGCGGGGACGGGGAGGGGAGGTACTACCTATCCC
TAGAGGGCTACCGGAGGCAAGTGAGGGAGAAGCTGGGCTTCGACCCCTTCCCCGGTACCCTCAACGTGCTGTTGGACCCA
ACATCCACGGAGAAGAAGTCTACCCTTATGTTCAAAAGACCGATAATATTGAAGGGATTTACGGAGAACGGGAAGAGGTA
TGGGGAGGTCTTGGCGTTCCCGGCGAGGGTCAGTGGGGTGGAGGCGGCTTTGGTTATACCCCTGAAGACCCACCACCCGC
CGGAGATAATAGAGTTAATTTCGCCCGTGGAGTTGAGGAAGGCGTTGAAACTTAA

Upstream 100 bases:

>100_bases
AACAAGTAGACCGTTAGGAGGGCTAAGAAGAGGGGAAAGGTCTCCACACTCGCTCCCTAATAAACCTTCTCTGAGAGCTA
ATACGCGAAGCGGGAACGCA

Downstream 100 bases:

>100_bases
GGACGGGGACGAGGTAGAGGTCCTCGTTTACTAGGCCGCTACGAGGCCCGGAAGATGAGTTTTATCAACGCCTTTCTTCC
CTCTCAATTCGGTGTCTAAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MKEPPLKPSPDEPLSSAIEEYLEFMEVSGANKKTLKSYRSALKDFLSVVGDKRVGEVKYEDYVKWVRKRMKEGFPRSVKK
DKRAQQTTLHYYSLFVRNFLKWLGLEGLPAVPKPRKDSVEALKPEEVAALLQAAYEDPIDFLIVSLLLETGLRASEALNV
TLDKVDFRRRQIAVRGKYGKERVVFYGPLTEEALRRAWSYIAPSGRLVPLSYQALYKRLKRLAKKAGLPEHKLHPHALRH
TFATEALRRGMSLPAVQRLLGHSDIKTTQIYLHLLVDDVRNQYFQAFSGGQHGVDLGGHYHADYRGYQVDGGVYYELAGG
LQGGVGHDPSGYEYYNSQYQFQIHHDHPLSERARVSKLPPGPPTSIPSTRGQTSARQPTYLSQGATAGARQRSPTSPAGR
PPALPALPPRSPSPASRSPPPPMPYKNEGVGAVGTAVAGGPILRPQGRPLQGLEGGLGIPEEGEVAYRGFEDYGEGNGAY
STTDFQAHIFERQGGERGRGGEVLPIPRGLPEASEGEAGLRPLPRYPQRAVGPNIHGEEVYPYVQKTDNIEGIYGEREEV
WGGLGVPGEGQWGGGGFGYTPEDPPPAGDNRVNFARGVEEGVET

Sequences:

>Translated_604_residues
MKEPPLKPSPDEPLSSAIEEYLEFMEVSGANKKTLKSYRSALKDFLSVVGDKRVGEVKYEDYVKWVRKRMKEGFPRSVKK
DKRAQQTTLHYYSLFVRNFLKWLGLEGLPAVPKPRKDSVEALKPEEVAALLQAAYEDPIDFLIVSLLLETGLRASEALNV
TLDKVDFRRRQIAVRGKYGKERVVFYGPLTEEALRRAWSYIAPSGRLVPLSYQALYKRLKRLAKKAGLPEHKLHPHALRH
TFATEALRRGMSLPAVQRLLGHSDIKTTQIYLHLLVDDVRNQYFQAFSGGQHGVDLGGHYHADYRGYQVDGGVYYELAGG
LQGGVGHDPSGYEYYNSQYQFQIHHDHPLSERARVSKLPPGPPTSIPSTRGQTSARQPTYLSQGATAGARQRSPTSPAGR
PPALPALPPRSPSPASRSPPPPMPYKNEGVGAVGTAVAGGPILRPQGRPLQGLEGGLGIPEEGEVAYRGFEDYGEGNGAY
STTDFQAHIFERQGGERGRGGEVLPIPRGLPEASEGEAGLRPLPRYPQRAVGPNIHGEEVYPYVQKTDNIEGIYGEREEV
WGGLGVPGEGQWGGGGFGYTPEDPPPAGDNRVNFARGVEEGVET
>Mature_604_residues
MKEPPLKPSPDEPLSSAIEEYLEFMEVSGANKKTLKSYRSALKDFLSVVGDKRVGEVKYEDYVKWVRKRMKEGFPRSVKK
DKRAQQTTLHYYSLFVRNFLKWLGLEGLPAVPKPRKDSVEALKPEEVAALLQAAYEDPIDFLIVSLLLETGLRASEALNV
TLDKVDFRRRQIAVRGKYGKERVVFYGPLTEEALRRAWSYIAPSGRLVPLSYQALYKRLKRLAKKAGLPEHKLHPHALRH
TFATEALRRGMSLPAVQRLLGHSDIKTTQIYLHLLVDDVRNQYFQAFSGGQHGVDLGGHYHADYRGYQVDGGVYYELAGG
LQGGVGHDPSGYEYYNSQYQFQIHHDHPLSERARVSKLPPGPPTSIPSTRGQTSARQPTYLSQGATAGARQRSPTSPAGR
PPALPALPPRSPSPASRSPPPPMPYKNEGVGAVGTAVAGGPILRPQGRPLQGLEGGLGIPEEGEVAYRGFEDYGEGNGAY
STTDFQAHIFERQGGERGRGGEVLPIPRGLPEASEGEAGLRPLPRYPQRAVGPNIHGEEVYPYVQKTDNIEGIYGEREEV
WGGLGVPGEGQWGGGGFGYTPEDPPPAGDNRVNFARGVEEGVET

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=184, Percent_Identity=38.0434782608696, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1790244, Length=291, Percent_Identity=27.4914089347079, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 66475; Mature: 66475

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEPPLKPSPDEPLSSAIEEYLEFMEVSGANKKTLKSYRSALKDFLSVVGDKRVGEVKYE
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
DYVKWVRKRMKEGFPRSVKKDKRAQQTTLHYYSLFVRNFLKWLGLEGLPAVPKPRKDSVE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
ALKPEEVAALLQAAYEDPIDFLIVSLLLETGLRASEALNVTLDKVDFRRRQIAVRGKYGK
HCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHEEEHHHHHHHHHHEEEECCCCC
ERVVFYGPLTEEALRRAWSYIAPSGRLVPLSYQALYKRLKRLAKKAGLPEHKLHPHALRH
CEEEEECCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
TFATEALRRGMSLPAVQRLLGHSDIKTTQIYLHLLVDDVRNQYFQAFSGGQHGVDLGGHY
HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
HADYRGYQVDGGVYYELAGGLQGGVGHDPSGYEYYNSQYQFQIHHDHPLSERARVSKLPP
ECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCEECCEEEEEEECCCCHHHHHHHCCCCC
GPPTSIPSTRGQTSARQPTYLSQGATAGARQRSPTSPAGRPPALPALPPRSPSPASRSPP
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPMPYKNEGVGAVGTAVAGGPILRPQGRPLQGLEGGLGIPEEGEVAYRGFEDYGEGNGAY
CCCCCCCCCCCHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCCC
STTDFQAHIFERQGGERGRGGEVLPIPRGLPEASEGEAGLRPLPRYPQRAVGPNIHGEEV
CCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHH
YPYVQKTDNIEGIYGEREEVWGGLGVPGEGQWGGGGFGYTPEDPPPAGDNRVNFARGVEE
CCHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
GVET
HCCC
>Mature Secondary Structure
MKEPPLKPSPDEPLSSAIEEYLEFMEVSGANKKTLKSYRSALKDFLSVVGDKRVGEVKYE
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
DYVKWVRKRMKEGFPRSVKKDKRAQQTTLHYYSLFVRNFLKWLGLEGLPAVPKPRKDSVE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
ALKPEEVAALLQAAYEDPIDFLIVSLLLETGLRASEALNVTLDKVDFRRRQIAVRGKYGK
HCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHEEEHHHHHHHHHHEEEECCCCC
ERVVFYGPLTEEALRRAWSYIAPSGRLVPLSYQALYKRLKRLAKKAGLPEHKLHPHALRH
CEEEEECCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
TFATEALRRGMSLPAVQRLLGHSDIKTTQIYLHLLVDDVRNQYFQAFSGGQHGVDLGGHY
HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
HADYRGYQVDGGVYYELAGGLQGGVGHDPSGYEYYNSQYQFQIHHDHPLSERARVSKLPP
ECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCEECCEEEEEEECCCCHHHHHHHCCCCC
GPPTSIPSTRGQTSARQPTYLSQGATAGARQRSPTSPAGRPPALPALPPRSPSPASRSPP
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPMPYKNEGVGAVGTAVAGGPILRPQGRPLQGLEGGLGIPEEGEVAYRGFEDYGEGNGAY
CCCCCCCCCCCHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCCC
STTDFQAHIFERQGGERGRGGEVLPIPRGLPEASEGEAGLRPLPRYPQRAVGPNIHGEEV
CCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHH
YPYVQKTDNIEGIYGEREEVWGGLGVPGEGQWGGGGFGYTPEDPPPAGDNRVNFARGVEE
CCHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
GVET
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]