Click here to switch to the map view.

The map label for this gene is albA2 [H]

Identifier: 156937211

GI number: 156937211

Start: 369581

End: 369844

Strand: Direct

Name: albA2 [H]

Synonym: Igni_0417

Alternate gene names: 156937211

Gene position: 369581-369844 (Clockwise)

Preceding gene: 156937210

Following gene: 156937215

Centisome position: 28.48

GC content: 56.06

Gene sequence:

>264_bases
TTGACTAAGGAGGTCATCGTTGTTAGGGACAAACCCGTAAGTGAGTACGTCTTGAACGCGGTGGTCGCATTTAACAGCGG
CGCGGAGGAAGTGGAAATAGTGGGCAGGGGGCGCTACATATCGAAGGCCGTGGTCGTGTTCAACAGGCTGAGGGAGAGGT
TGGAAGAGACGTTGAAGGTTGTTAACGTGGAGATAGGGAGCGAGGAGAGCAGGCGGGGGAGGCCGGTGGCCTACATCAAG
ATTCGAGTGACGCAAGGGCTCTGA

Upstream 100 bases:

>100_bases
TGAAGGTGGCGATGTTTTTGGGACTAATAGGCATCTTGGTCGACAGGCTGGTTCAACCCGTTTTTTATCCTCACGTGCTT
CACGCGGGGGGAGAAGAGGG

Downstream 100 bases:

>100_bases
AGGCCCTCAAGGTGTTGTTGAAGGCCCCCCAGAAGTCCGACTTGGCCAGCTCCATAGCCTCCTCCAGCCTCCGCGTGTAT
TCTGCTTCCGCCAGCTCCGG

Product: Alba, DNA/RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MTKEVIVVRDKPVSEYVLNAVVAFNSGAEEVEIVGRGRYISKAVVVFNRLRERLEETLKVVNVEIGSEESRRGRPVAYIK
IRVTQGL

Sequences:

>Translated_87_residues
MTKEVIVVRDKPVSEYVLNAVVAFNSGAEEVEIVGRGRYISKAVVVFNRLRERLEETLKVVNVEIGSEESRRGRPVAYIK
IRVTQGL
>Mature_86_residues
TKEVIVVRDKPVSEYVLNAVVAFNSGAEEVEIVGRGRYISKAVVVFNRLRERLEETLKVVNVEIGSEESRRGRPVAYIKI
RVTQGL

Specific function: Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May

COG id: COG1581

COG function: function code K; Archaeal DNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Probable). Chromosome (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like Alba family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013795
- InterPro:   IPR002775 [H]

Pfam domain/function: PF01918 Alba [H]

EC number: NA

Molecular weight: Translated: 9817; Mature: 9685

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKEVIVVRDKPVSEYVLNAVVAFNSGAEEVEIVGRGRYISKAVVVFNRLRERLEETLKV
CCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHE
VNVEIGSEESRRGRPVAYIKIRVTQGL
EEEEECCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure 
TKEVIVVRDKPVSEYVLNAVVAFNSGAEEVEIVGRGRYISKAVVVFNRLRERLEETLKV
CCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHE
VNVEIGSEESRRGRPVAYIKIRVTQGL
EEEEECCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8972852 [H]