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The map label for this gene is ribB [H]

Identifier: 156937215

GI number: 156937215

Start: 375671

End: 376345

Strand: Direct

Name: ribB [H]

Synonym: Igni_0421

Alternate gene names: 156937215

Gene position: 375671-376345 (Clockwise)

Preceding gene: 156937211

Following gene: 156937227

Centisome position: 28.95

GC content: 62.07

Gene sequence:

>675_bases
ATGCGGGAGCTAAGGGAGAGGCTGCTCTCGGGGGCGCCGTTCATGCTCTTCGACTTCCCCGGGAGGGAGGAGGAGGTGGA
CTTGGTCTATTACGCTCCGGCCGTAACCGCGGCCAGCGTTTACAACTTAAGGACCTTGGCCGGCGGGCTGATCTGCTTCG
CCACAACTGAGGAGGTGGGCTCCGCCTTAGGGCTGGAGAAGGCTTGGAAGACTCTGTCCAAGCAAGGCTACTCCAAGCTA
GTCAAGAAGCCCAAGTACGGCGACTACCCGGCGTTCTCCGTGTGGGTGAACCACGTGGACGTCAGAACCGGAATAAGCGA
CGAGGACAGGGCTTTAACGATAAGGAAGCTCGCGGAGGTGGCGGAGCTGGCCTTGAGCGACCCGGAGGAGGCCAAGAGGA
GGTTCGAGGAGGAGTTCTACGCCCCCGGCCACGTGCCGGTCCTCTTGGCCTCCAAGCTGGAGGAGAGGAGGGGCCACACG
GAGCTGAGCGTGAGGCTGCTGGAGGCCTTAAGGCTGACGCCCGCGGCGGCCTTCGCGGAGATGTTGGACTACGGGAGGTC
GATGAGCTTGAGGAGGGCGGAGGAGCTCTCGAGGTCCTTGGGGATACCTCTCATTAAGGGGGAAGAGGTGTTGGCCTTTC
TGGGGATGAGGAGTGACTCCAATGTTGAGCGGTGA

Upstream 100 bases:

>100_bases
CCCCTAGTGCTACAGCCGGGATAGTGGCAAAGCAAGGCCTTCCCTTCACGCGACGGCAAGTTTAATATTAAATTCCTTTG
TTGTTCCGACGGTCTCGTGG

Downstream 100 bases:

>100_bases
GAGCCTTTCGCCCCTACTGACCCGCGAGGGGCGCGCTGAGCTCCCTTTCAAGGAGCACCTTAATGTCGTCCTTATGTACC
CTCATCAAGTGTAAGTAGAA

Product: 3,4-dihydroxy-2-butanone 4-phosphate synthase

Products: NA

Alternate protein names: DHBP synthase [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MRELRERLLSGAPFMLFDFPGREEEVDLVYYAPAVTAASVYNLRTLAGGLICFATTEEVGSALGLEKAWKTLSKQGYSKL
VKKPKYGDYPAFSVWVNHVDVRTGISDEDRALTIRKLAEVAELALSDPEEAKRRFEEEFYAPGHVPVLLASKLEERRGHT
ELSVRLLEALRLTPAAAFAEMLDYGRSMSLRRAEELSRSLGIPLIKGEEVLAFLGMRSDSNVER

Sequences:

>Translated_224_residues
MRELRERLLSGAPFMLFDFPGREEEVDLVYYAPAVTAASVYNLRTLAGGLICFATTEEVGSALGLEKAWKTLSKQGYSKL
VKKPKYGDYPAFSVWVNHVDVRTGISDEDRALTIRKLAEVAELALSDPEEAKRRFEEEFYAPGHVPVLLASKLEERRGHT
ELSVRLLEALRLTPAAAFAEMLDYGRSMSLRRAEELSRSLGIPLIKGEEVLAFLGMRSDSNVER
>Mature_224_residues
MRELRERLLSGAPFMLFDFPGREEEVDLVYYAPAVTAASVYNLRTLAGGLICFATTEEVGSALGLEKAWKTLSKQGYSKL
VKKPKYGDYPAFSVWVNHVDVRTGISDEDRALTIRKLAEVAELALSDPEEAKRRFEEEFYAPGHVPVLLASKLEERRGHT
ELSVRLLEALRLTPAAAFAEMLDYGRSMSLRRAEELSRSLGIPLIKGEEVLAFLGMRSDSNVER

Specific function: Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate [H]

COG id: COG0108

COG function: function code H; 3,4-dihydroxy-2-butanone 4-phosphate synthase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHBP synthase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320695, Length=209, Percent_Identity=30.1435406698565, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR000422 [H]

Pfam domain/function: PF00926 DHBP_synthase [H]

EC number: =4.1.99.12 [H]

Molecular weight: Translated: 25084; Mature: 25084

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRELRERLLSGAPFMLFDFPGREEEVDLVYYAPAVTAASVYNLRTLAGGLICFATTEEVG
CHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEHHHHH
SALGLEKAWKTLSKQGYSKLVKKPKYGDYPAFSVWVNHVDVRTGISDEDRALTIRKLAEV
HHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
AELALSDPEEAKRRFEEEFYAPGHVPVLLASKLEERRGHTELSVRLLEALRLTPAAAFAE
HHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHH
MLDYGRSMSLRRAEELSRSLGIPLIKGEEVLAFLGMRSDSNVER
HHHHCCCCHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRELRERLLSGAPFMLFDFPGREEEVDLVYYAPAVTAASVYNLRTLAGGLICFATTEEVG
CHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEHHHHH
SALGLEKAWKTLSKQGYSKLVKKPKYGDYPAFSVWVNHVDVRTGISDEDRALTIRKLAEV
HHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
AELALSDPEEAKRRFEEEFYAPGHVPVLLASKLEERRGHTELSVRLLEALRLTPAAAFAE
HHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHH
MLDYGRSMSLRRAEELSRSLGIPLIKGEEVLAFLGMRSDSNVER
HHHHCCCCHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]