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The map label for this gene is yjjV [C]

Identifier: 156936925

GI number: 156936925

Start: 117775

End: 118473

Strand: Direct

Name: yjjV [C]

Synonym: Igni_0130

Alternate gene names: 156936925

Gene position: 117775-118473 (Clockwise)

Preceding gene: 156936922

Following gene: 156936928

Centisome position: 9.08

GC content: 55.51

Gene sequence:

>699_bases
GTGGACGCCCACGTCCACTTATACGAAGACCCCACGATGGCGGACGAGGAAACCATCCTAGTGGCGGTCTCAGACGACTT
GGAGAGCTCTCTAAAGACCCTCTCGCTCAAGGGAGAGAACGTAGTCCCGTGCGTGGGCGTTCACCCGTGGAGCTCCCCCG
AGGTGGGGGAGGAGGAACTGAAGGAGTTCGAGAAGCTCGTGGAAAGGGCTCTCTGTTTAGGCGAGATAGGGCTGGACAAG
CGTTACGTCCCGGACTTTGAGAAGCAGAGGAGGGTCTTCGAACACTTTCTAACGTTATCCAAGGAGTACTCCTTACCGGT
GAACCTCCACGCTTTGGACGCTTGGGAAGAAGTCTTCAACATGTTGCTGAGATATGACGTGGATAGGGCCTACTTCCACT
GGTTCAACGGTCCCCTCCACCTCTTAGACGAGATAGTCTCTCAAGGCTATTACGTGGGCATAAACGCGGCGGCCAAAATA
CAGAAGAAACACTTAAGGGTGATAGAGAGGGCTCCGCTGACCTCTATCATGACCGAGAGCGACGGACCTTACGTCTACAG
AGGGGTCAAGCTAACTCCCAAGGCCGTTCCGGAGCTGATAGGAATTATTGCAAAGGTCAAGAAAGTGAGCGAGGAAGCGG
TCGCTGAAGCCGTCTTGCGGAACTTCAAGCGCTGGTCCGGCGCCCTCGCCCAAGGCTGA

Upstream 100 bases:

>100_bases
CTACGGCGTTGTCGAGGTCGTCTTCGAGTTCCCTTAAGAACTGCTTCAACATTAATTCGGCCCTTGGGACCCCGCGCGGT
GGAAGGCTATTAGGAGGGTA

Downstream 100 bases:

>100_bases
ACTCTTCACCGGTCAGCTCGGGGGAGCGCTCATCGGACAGAGGGTTCCCACAGATCAAACAGAAATTGAATTCATCTCTG
TACTTGAGCCCGCAGAGCCT

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MDAHVHLYEDPTMADEETILVAVSDDLESSLKTLSLKGENVVPCVGVHPWSSPEVGEEELKEFEKLVERALCLGEIGLDK
RYVPDFEKQRRVFEHFLTLSKEYSLPVNLHALDAWEEVFNMLLRYDVDRAYFHWFNGPLHLLDEIVSQGYYVGINAAAKI
QKKHLRVIERAPLTSIMTESDGPYVYRGVKLTPKAVPELIGIIAKVKKVSEEAVAEAVLRNFKRWSGALAQG

Sequences:

>Translated_232_residues
MDAHVHLYEDPTMADEETILVAVSDDLESSLKTLSLKGENVVPCVGVHPWSSPEVGEEELKEFEKLVERALCLGEIGLDK
RYVPDFEKQRRVFEHFLTLSKEYSLPVNLHALDAWEEVFNMLLRYDVDRAYFHWFNGPLHLLDEIVSQGYYVGINAAAKI
QKKHLRVIERAPLTSIMTESDGPYVYRGVKLTPKAVPELIGIIAKVKKVSEEAVAEAVLRNFKRWSGALAQG
>Mature_232_residues
MDAHVHLYEDPTMADEETILVAVSDDLESSLKTLSLKGENVVPCVGVHPWSSPEVGEEELKEFEKLVERALCLGEIGLDK
RYVPDFEKQRRVFEHFLTLSKEYSLPVNLHALDAWEEVFNMLLRYDVDRAYFHWFNGPLHLLDEIVSQGYYVGINAAAKI
QKKHLRVIERAPLTSIMTESDGPYVYRGVKLTPKAVPELIGIIAKVKKVSEEAVAEAVLRNFKRWSGALAQG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=200, Percent_Identity=31, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI110349734, Length=200, Percent_Identity=31.5, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI226061853, Length=207, Percent_Identity=30.4347826086957, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI226061614, Length=192, Percent_Identity=29.6875, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI226061595, Length=167, Percent_Identity=31.1377245508982, Blast_Score=72, Evalue=3e-13,
Organism=Escherichia coli, GI87082439, Length=247, Percent_Identity=26.7206477732794, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787342, Length=218, Percent_Identity=27.5229357798165, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71980746, Length=164, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 26307; Mature: 26307

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAHVHLYEDPTMADEETILVAVSDDLESSLKTLSLKGENVVPCVGVHPWSSPEVGEEEL
CCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHEECCCCCCCEEECCCCCCCCCCCHHHH
KEFEKLVERALCLGEIGLDKRYVPDFEKQRRVFEHFLTLSKEYSLPVNLHALDAWEEVFN
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH
MLLRYDVDRAYFHWFNGPLHLLDEIVSQGYYVGINAAAKIQKKHLRVIERAPLTSIMTES
HHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCHHHHHCCC
DGPYVYRGVKLTPKAVPELIGIIAKVKKVSEEAVAEAVLRNFKRWSGALAQG
CCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDAHVHLYEDPTMADEETILVAVSDDLESSLKTLSLKGENVVPCVGVHPWSSPEVGEEEL
CCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHEECCCCCCCEEECCCCCCCCCCCHHHH
KEFEKLVERALCLGEIGLDKRYVPDFEKQRRVFEHFLTLSKEYSLPVNLHALDAWEEVFN
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH
MLLRYDVDRAYFHWFNGPLHLLDEIVSQGYYVGINAAAKIQKKHLRVIERAPLTSIMTES
HHHHHCCHHHHHHHCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCHHHHHCCC
DGPYVYRGVKLTPKAVPELIGIIAKVKKVSEEAVAEAVLRNFKRWSGALAQG
CCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]