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The map label for this gene is ytrF [H]

Identifier: 154687162

GI number: 154687162

Start: 2861386

End: 2862696

Strand: Reverse

Name: ytrF [H]

Synonym: RBAM_027340

Alternate gene names: 154687162

Gene position: 2862696-2861386 (Counterclockwise)

Preceding gene: 154687163

Following gene: 154687161

Centisome position: 73.05

GC content: 45.08

Gene sequence:

>1311_bases
TTGAGATTTAAGGATCAGATTCACTTTATCAGAAGAAATATGAAGAAAAACCGGCTGCGTGTTTTCATGACGGTGCTGGC
GACGACAATGGCGTGCGCGTTTTTAGTGGTGCTGGCGTCCGTCGGATTCGGCATCCAAAAAACGATTACAGACATTACGA
TGAGCCAGCAGATTGTTACGGAAATCAATGTGCTCGGGCAAGAGAACGGAAAAGCCGTGAAGAAATCAGACTTGGAAAAG
TATAAAAATGTCAAGTCTGTCGTTGAAAGAACACAAGTGTATGAACCGAACAAAGCGTCATTGGGAAACCGAACAAATGA
AGATTCAGCCATTGTGCTGACAAACATGAACGATGAAGTCAAAGCCAATATGGAGCTTGATCAGGGAAGGGTCGCCCGCA
CAGAGAATGAAATCGTGGTCGGCTATGATTTTGCGAAGAACCTATTGACGAAAAAAGAGGCTGACGCTTACGACAAAGAG
TTAAAGGATCACCAAGGCGACATGTCGGAGGTGAAAAAACCAAAAGGCTATACGAAAGACCTGCTTAATAAAACGATACA
GCTGAGCATCTCCAAAACAAACAAAGACGGAGACGTTGAGAAAACGAAAACGTACGACTTTAAAGTAGTCGGAATTACAA
AAAAACCGTCCCAAGATTGGATGGAGGATACAAATATTTTTGTGAGTGATCAATTCAAGAAAGACTTCTCAACATTCTTG
GATCTGAAGAATGGAAATGCGGAAAAAAGCATCAATGTGTATGCGGACAAATTCGATCATGTCGATCAGCTTACCCATGA
CCTCACGGATGACGGCTTTTATGTCAGATCTGTCACTACCGAGCTGAAGGGCGTCAACACCTTTTTCCTCGTCTTTAAAA
TCGGCCTGATCTTTGTCGGCTTTATCGCCGTCGTGATTTCTGCCATCGGTATTTTCAATACGATGACGATGGCGGTGACG
GAACGAACGCAGGAAATCGGGATTATGAAAGCGATTGGCGCAAGCCCGTCCATCATCCGCAGAATGTTCCTGATGGAAAG
CGCCTATATCGGGATATTAGGTTCTGTCATCGGGATTATCATTTCTTACGGAGTGAGTTTTGCCGTCAATCTGGCTGTGC
CGGTTATTTTGAAAGCGGTAGGGGGAAACACCGGAGCCGAAGATCTTCATTATACCTTCTCCTATATCCCGCTCAGCCTC
GTTGTGATCGCAGTTGTCATTTGTGCGGGGGTCGCGGTGATTTCCGGTATGAATCCGGCCCGCAAAGCGACAAAAACCAA
CGTTCTGACTGCATTAAGAAGAGAACTGTAA

Upstream 100 bases:

>100_bases
GGGATTACATTTGTCATCATTACGCATGACGATGAAGTCGCTTCGATCGCGCATTCAAAATTCCAGCTGCATGACGGTGT
ATTAAAAGGGGGCGTTACTG

Downstream 100 bases:

>100_bases
AGGAAAAAAGCCGGCTGGACATCAGCCGGTTTTTCCTCTATCTATCAGAAAAGGGCGGATACCATGTTTCACATTTTGTT
AATAGAAGATGATAACACTT

Product: YtrF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MRFKDQIHFIRRNMKKNRLRVFMTVLATTMACAFLVVLASVGFGIQKTITDITMSQQIVTEINVLGQENGKAVKKSDLEK
YKNVKSVVERTQVYEPNKASLGNRTNEDSAIVLTNMNDEVKANMELDQGRVARTENEIVVGYDFAKNLLTKKEADAYDKE
LKDHQGDMSEVKKPKGYTKDLLNKTIQLSISKTNKDGDVEKTKTYDFKVVGITKKPSQDWMEDTNIFVSDQFKKDFSTFL
DLKNGNAEKSINVYADKFDHVDQLTHDLTDDGFYVRSVTTELKGVNTFFLVFKIGLIFVGFIAVVISAIGIFNTMTMAVT
ERTQEIGIMKAIGASPSIIRRMFLMESAYIGILGSVIGIIISYGVSFAVNLAVPVILKAVGGNTGAEDLHYTFSYIPLSL
VVIAVVICAGVAVISGMNPARKATKTNVLTALRREL

Sequences:

>Translated_436_residues
MRFKDQIHFIRRNMKKNRLRVFMTVLATTMACAFLVVLASVGFGIQKTITDITMSQQIVTEINVLGQENGKAVKKSDLEK
YKNVKSVVERTQVYEPNKASLGNRTNEDSAIVLTNMNDEVKANMELDQGRVARTENEIVVGYDFAKNLLTKKEADAYDKE
LKDHQGDMSEVKKPKGYTKDLLNKTIQLSISKTNKDGDVEKTKTYDFKVVGITKKPSQDWMEDTNIFVSDQFKKDFSTFL
DLKNGNAEKSINVYADKFDHVDQLTHDLTDDGFYVRSVTTELKGVNTFFLVFKIGLIFVGFIAVVISAIGIFNTMTMAVT
ERTQEIGIMKAIGASPSIIRRMFLMESAYIGILGSVIGIIISYGVSFAVNLAVPVILKAVGGNTGAEDLHYTFSYIPLSL
VVIAVVICAGVAVISGMNPARKATKTNVLTALRREL
>Mature_436_residues
MRFKDQIHFIRRNMKKNRLRVFMTVLATTMACAFLVVLASVGFGIQKTITDITMSQQIVTEINVLGQENGKAVKKSDLEK
YKNVKSVVERTQVYEPNKASLGNRTNEDSAIVLTNMNDEVKANMELDQGRVARTENEIVVGYDFAKNLLTKKEADAYDKE
LKDHQGDMSEVKKPKGYTKDLLNKTIQLSISKTNKDGDVEKTKTYDFKVVGITKKPSQDWMEDTNIFVSDQFKKDFSTFL
DLKNGNAEKSINVYADKFDHVDQLTHDLTDDGFYVRSVTTELKGVNTFFLVFKIGLIFVGFIAVVISAIGIFNTMTMAVT
ERTQEIGIMKAIGASPSIIRRMFLMESAYIGILGSVIGIIISYGVSFAVNLAVPVILKAVGGNTGAEDLHYTFSYIPLSL
VVIAVVICAGVAVISGMNPARKATKTNVLTALRREL

Specific function: Part of the ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential). Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

Organism=Escherichia coli, GI1787105, Length=173, Percent_Identity=30.0578034682081, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 48446; Mature: 48446

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKDQIHFIRRNMKKNRLRVFMTVLATTMACAFLVVLASVGFGIQKTITDITMSQQIVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EINVLGQENGKAVKKSDLEKYKNVKSVVERTQVYEPNKASLGNRTNEDSAIVLTNMNDEV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC
KANMELDQGRVARTENEIVVGYDFAKNLLTKKEADAYDKELKDHQGDMSEVKKPKGYTKD
EECCCCCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHH
LLNKTIQLSISKTNKDGDVEKTKTYDFKVVGITKKPSQDWMEDTNIFVSDQFKKDFSTFL
HCCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCEEEEHHHHHHHHHHH
DLKNGNAEKSINVYADKFDHVDQLTHDLTDDGFYVRSVTTELKGVNTFFLVFKIGLIFVG
HCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHH
FIAVVISAIGIFNTMTMAVTERTQEIGIMKAIGASPSIIRRMFLMESAYIGILGSVIGII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ISYGVSFAVNLAVPVILKAVGGNTGAEDLHYTFSYIPLSLVVIAVVICAGVAVISGMNPA
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
RKATKTNVLTALRREL
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRFKDQIHFIRRNMKKNRLRVFMTVLATTMACAFLVVLASVGFGIQKTITDITMSQQIVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
EINVLGQENGKAVKKSDLEKYKNVKSVVERTQVYEPNKASLGNRTNEDSAIVLTNMNDEV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC
KANMELDQGRVARTENEIVVGYDFAKNLLTKKEADAYDKELKDHQGDMSEVKKPKGYTKD
EECCCCCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHH
LLNKTIQLSISKTNKDGDVEKTKTYDFKVVGITKKPSQDWMEDTNIFVSDQFKKDFSTFL
HCCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCEEEEHHHHHHHHHHH
DLKNGNAEKSINVYADKFDHVDQLTHDLTDDGFYVRSVTTELKGVNTFFLVFKIGLIFVG
HCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHH
FIAVVISAIGIFNTMTMAVTERTQEIGIMKAIGASPSIIRRMFLMESAYIGILGSVIGII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ISYGVSFAVNLAVPVILKAVGGNTGAEDLHYTFSYIPLSLVVIAVVICAGVAVISGMNPA
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
RKATKTNVLTALRREL
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]