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The map label for this gene is ccpA [H]

Identifier: 154687114

GI number: 154687114

Start: 2811691

End: 2812695

Strand: Reverse

Name: ccpA [H]

Synonym: RBAM_026860

Alternate gene names: 154687114

Gene position: 2812695-2811691 (Counterclockwise)

Preceding gene: 154687115

Following gene: 154687113

Centisome position: 71.78

GC content: 48.56

Gene sequence:

>1005_bases
GTGAGCAACATTACGATATACGATGTGGCCAGAGAAGCAAATGTCAGTATGGCGACTGTTTCCCGCGTCGTGAACGGCAA
CCCGAATGTAAAACCGACGACCAGAAAAAAAGTATTGGAAGCCATTGACCGGCTCGGCTATCGCCCGAACGCGGTGGCAA
GAGGGCTTGCAAGCAAAAAAACGACTACGGTCGGCGTCATCATCCCTGATATCTCAAGCATTTTCTACTCTGAACTTGCG
CGTGGAATTGAAGATATCGCGACGATGTACAAATATAATATTATTTTAAGCAACTCGGACCAAAATCTTGAGAAAGAACT
GCATCTGTTAAATACGATGCTCGGCAAACAAGTGGACGGTATCGTATTTATGGGCGGCAACATTACGGACGAGCATGTCG
AAGAATTTAAGCGCTCTCCTGTGCCGATCGTCTTGGCGGCATCAGTGGAAGAACAGGGCGAGACGCCTTCTGTCGCCATT
GATTACGAACAGGCGATTTATGATGCCGTTAAGCTTTTCATTGATAAAGGGCATCGCGATATCGCATTCGTCTCCGGACC
GATGCAAGAGCCGATCAACCGTTCGAAAAAACTGCAAGGGTACAAACGGGCGCTTGAAGAAGCGGCGATTCCGTTTAACG
AGCAATTCGTAGCGGAAGGCGATTACACCTATGATTCCGGTATGGAGGCGCTTCAAAGCTTGATGGGCCTTGACCGGAAA
CCGACGGCGATTCTTTCTGCAACGGATGAAATGGCCCTCGGCATTATCCATGCGGCCCAAGATCAAGGTCTTTCGATACC
TGATGATCTTGATATTATCGGTTTTGACAATACGAGATTGAGCCTGATGGTCCGCCCTCAGCTTTCAACAGTCGTGCAGC
CTACGTACGATATCGGCGCCGTGGCGATGAGACTTTTGACAAAACTGATGAACAAAGAGCCGGTTGAAGAGCAGATCGTC
GAATTGCCTCACCGCATCGAATTAAGACAATCAACCAAGTCATAA

Upstream 100 bases:

>100_bases
AATCATAAACGACAGAATGCGAAATCGTACGACATTTCTTTACATAAAGTGTTTATGCTATAGATAAGGATAAGTGTATC
CAGTAAAAGGAGTGGTTTCA

Downstream 100 bases:

>100_bases
AAAAACGGAAAAGCAAGCTTCACTCTGAGGGGTGGAATCTTGCTTTTTTACTTGAGTAAGGAGAAGATATGAAACGTTTT
GATTATCTGACGCCCGTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: Glucose-resistance amylase regulator [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNLEKELHLLNTMLGKQVDGIVFMGGNITDEHVEEFKRSPVPIVLAASVEEQGETPSVAI
DYEQAIYDAVKLFIDKGHRDIAFVSGPMQEPINRSKKLQGYKRALEEAAIPFNEQFVAEGDYTYDSGMEALQSLMGLDRK
PTAILSATDEMALGIIHAAQDQGLSIPDDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEQIV
ELPHRIELRQSTKS

Sequences:

>Translated_334_residues
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNLEKELHLLNTMLGKQVDGIVFMGGNITDEHVEEFKRSPVPIVLAASVEEQGETPSVAI
DYEQAIYDAVKLFIDKGHRDIAFVSGPMQEPINRSKKLQGYKRALEEAAIPFNEQFVAEGDYTYDSGMEALQSLMGLDRK
PTAILSATDEMALGIIHAAQDQGLSIPDDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEQIV
ELPHRIELRQSTKS
>Mature_333_residues
SNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELAR
GIEDIATMYKYNIILSNSDQNLEKELHLLNTMLGKQVDGIVFMGGNITDEHVEEFKRSPVPIVLAASVEEQGETPSVAID
YEQAIYDAVKLFIDKGHRDIAFVSGPMQEPINRSKKLQGYKRALEEAAIPFNEQFVAEGDYTYDSGMEALQSLMGLDRKP
TAILSATDEMALGIIHAAQDQGLSIPDDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEQIVE
LPHRIELRQSTKS

Specific function: Transcriptional regulator involved in both the repression of carbohydrate utilization genes such as the alpha- amylase (AmyE) and the acetyl-coenzyme A synthetase (AcsA); and in the positive regulation of genes involved in excretion of excess carbon such

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=331, Percent_Identity=36.2537764350453, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1787948, Length=330, Percent_Identity=33.6363636363636, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1790194, Length=319, Percent_Identity=30.7210031347962, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1789068, Length=300, Percent_Identity=31.3333333333333, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1788474, Length=302, Percent_Identity=31.1258278145695, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789202, Length=291, Percent_Identity=31.9587628865979, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1787580, Length=330, Percent_Identity=29.3939393939394, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI48994940, Length=318, Percent_Identity=25.4716981132075, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786540, Length=319, Percent_Identity=29.4670846394984, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790715, Length=326, Percent_Identity=21.4723926380368, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787906, Length=335, Percent_Identity=23.5820895522388, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786268, Length=299, Percent_Identity=25.752508361204, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789456, Length=353, Percent_Identity=26.0623229461756, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790689, Length=302, Percent_Identity=25.4966887417219, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006377
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36955; Mature: 36824

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKK
CCCEEEEEEHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCC
TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNLEKELHLLNTMLGKQVDG
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHCCCCCC
IVFMGGNITDEHVEEFKRSPVPIVLAASVEEQGETPSVAIDYEQAIYDAVKLFIDKGHRD
EEEECCCCCHHHHHHHHCCCCCEEEEECCHHCCCCCCEEECHHHHHHHHHHHHHHCCCCC
IAFVSGPMQEPINRSKKLQGYKRALEEAAIPFNEQFVAEGDYTYDSGMEALQSLMGLDRK
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCC
PTAILSATDEMALGIIHAAQDQGLSIPDDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGA
CCEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCHHHHHCCCHHHHH
VAMRLLTKLMNKEPVEEQIVELPHRIELRQSTKS
HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCC
>Mature Secondary Structure 
SNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKK
CCEEEEEEHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCC
TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNLEKELHLLNTMLGKQVDG
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHCCCCCC
IVFMGGNITDEHVEEFKRSPVPIVLAASVEEQGETPSVAIDYEQAIYDAVKLFIDKGHRD
EEEECCCCCHHHHHHHHCCCCCEEEEECCHHCCCCCCEEECHHHHHHHHHHHHHHCCCCC
IAFVSGPMQEPINRSKKLQGYKRALEEAAIPFNEQFVAEGDYTYDSGMEALQSLMGLDRK
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCC
PTAILSATDEMALGIIHAAQDQGLSIPDDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGA
CCEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCHHHHHCCCHHHHH
VAMRLLTKLMNKEPVEEQIVELPHRIELRQSTKS
HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1904524; 9387221; 9384377 [H]