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The map label for this gene is araQ [H]

Identifier: 154687007

GI number: 154687007

Start: 2703404

End: 2704246

Strand: Reverse

Name: araQ [H]

Synonym: RBAM_025790

Alternate gene names: 154687007

Gene position: 2704246-2703404 (Counterclockwise)

Preceding gene: 154687008

Following gene: 154687006

Centisome position: 69.01

GC content: 45.2

Gene sequence:

>843_bases
TTGCGTAACAATCACATGTTTTCCGTGTACAGAGTCGCGTTTACCTTGTTTTTTATCATGCTGAGCCTGTTGTATATCTT
TCCGATGATCTGTCTATTGCTCGGTTCTTTAAAGCCGTCATCTGAGCTGATGCGTATCGGGCTGAATCTGCGTCTTGATC
CGGATGTGATGAGCCTTGATAACTACACCTATTTGTTCAACGGGGGGAGCATTTATTTCAAATGGTTTTTTAACAGCCTG
CTGCTCGGTGTTCTCACCACGGTTCTCACGCTGTTTTTTTCCTCTTTGATCGGCTACGGACTCGGTGTCTACGAATTTAA
AGGCAGAAATATTATTTTCGTTCTTGTGCTGATCATTATGATGGTGCCTCTTGAAGTGATGATGCTTCCGTTGTTCAAAT
TGACGGTGGGTCTTCATTTGATCGATTCTTATACGGGAGTGATTCTGCCGTTTATTGTGTCGCCTGTCGCCGTGTTCTTT
TTCCGGCAATATGCGCTCGGACTTCCGAAGGATCTGCTTGATTCAGCGAGAATGGACGGCTGCACCGAATTCGGCATTTT
TTTCAGAATTATGGCGCCGCTCATGAAACCGGCATTCGGGGCAATGATCATTCTTCAATCTTTAAACAGCTGGAATAACT
TTTTATGGCCGCTGATCGTGCTTCGGTCGAAAGAAATGTTTACGCTTCCAATCGGACTTTCAGGGCTGCTGAGTCCGTAC
GGCAACAACTATGACATGCTGATTTCCGGGTCCGTTTTTGCGATACTGCCGGTGATCATCATATTCTTGTTTTTCCAAAA
ATACTTCATTTCCGGACTCACAGTAGGCGGAGTGAAGGGATAG

Upstream 100 bases:

>100_bases
GTACGGGGCCGCAATCGGAATTGTCCTTTTGCTTGTCATCTTACTAGTCAGTCTTGTTTCACTGAAACTGTCCGGTTCGT
TTAAAGGGGAGGGATAAGCG

Downstream 100 bases:

>100_bases
AGAGAGGGAGGAAATATAATGAAAAAAGCGGGGATTACAGCAGATAAAGAATATATCATCGGTGAAGTGGACAAACGGAT
GTACGGATCATTTATAGAAC

Product: AraQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MRNNHMFSVYRVAFTLFFIMLSLLYIFPMICLLLGSLKPSSELMRIGLNLRLDPDVMSLDNYTYLFNGGSIYFKWFFNSL
LLGVLTTVLTLFFSSLIGYGLGVYEFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTGVILPFIVSPVAVFF
FRQYALGLPKDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSGLLSPY
GNNYDMLISGSVFAILPVIIIFLFFQKYFISGLTVGGVKG

Sequences:

>Translated_280_residues
MRNNHMFSVYRVAFTLFFIMLSLLYIFPMICLLLGSLKPSSELMRIGLNLRLDPDVMSLDNYTYLFNGGSIYFKWFFNSL
LLGVLTTVLTLFFSSLIGYGLGVYEFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTGVILPFIVSPVAVFF
FRQYALGLPKDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSGLLSPY
GNNYDMLISGSVFAILPVIIIFLFFQKYFISGLTVGGVKG
>Mature_280_residues
MRNNHMFSVYRVAFTLFFIMLSLLYIFPMICLLLGSLKPSSELMRIGLNLRLDPDVMSLDNYTYLFNGGSIYFKWFFNSL
LLGVLTTVLTLFFSSLIGYGLGVYEFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTGVILPFIVSPVAVFF
FRQYALGLPKDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSGLLSPY
GNNYDMLISGSVFAILPVIIIFLFFQKYFISGLTVGGVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=273, Percent_Identity=30.7692307692308, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789860, Length=204, Percent_Identity=27.9411764705882, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1790464, Length=213, Percent_Identity=24.4131455399061, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31699; Mature: 31699

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure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CCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]