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The map label for this gene is araP [H]

Identifier: 154687008

GI number: 154687008

Start: 2704250

End: 2705191

Strand: Reverse

Name: araP [H]

Synonym: RBAM_025800

Alternate gene names: 154687008

Gene position: 2705191-2704250 (Counterclockwise)

Preceding gene: 154687009

Following gene: 154687007

Centisome position: 69.03

GC content: 45.54

Gene sequence:

>942_bases
ATGAGACCTGTAAAGACAGAGACAGCGCAAACCGTTTCTGCAGTCCGGAAGAAGCCGCGCCGGCGCAATGTGCTGTATTC
AAAAAAAGCGGCGCCTTATCTTTTTACGGCGCCATTTATCATTTCGTTTCTCGTTTTCTTTTTGTATCCGATTATCAGCG
TGTTTATCATGAGCTTTCAACGGATACTGCCGGGAGAAATTACATTTGTCGGGTTTTCCAATTATACCGCTCTTCTTAAT
CCAACCTTTTATACGGCATTATTTAACACATTGGAATATACCTTCTGGACGCTGATCGTGCTGATTCCGGTGCCGCTTCT
TTTGGCGGTGATTCTGAATTCGAAGCTCGTCAGGTTCAGAAATGTGTTTAAATCGGCTCTGTTTGTACCGGCTTTAACAT
CGACGATCGTAGCGGGGATTATTTTCCGTCTGATGTTCGGAGAAATGAATACGTCGCTTGCAAACGAGCTGATGATGAAG
CTTGGCGCATCACCCCAAAACTGGCTCAACAACAAAGGTACCGGCATGTTTTTAATGGTGCTGCTTGCGTCATGGAGGTG
GATGGGGATTAACATTCTTTACTTTCTGGCGGGATTGCAAAACGTGCCGAAAGAATTGTATGAAGCGGCTGAAATTGACG
GGGCGAGTACGTGGAAAAAGTTCCGGCATATTACCCTTCCATTTTTAAAGCCGGTGTCCGTTTATGTGTTAACGATCAGT
ATTATCGGCGGTTTCAGAATGTTTGAGGAAAGCTATGTGCTTTGGCAGAATAATTCCCCGGGCAATATCGGCCTCACGCT
TGTCGGTTATTTATATCAGCAGGGGCTTGCATACAACGAAATGGGGTACGGGGCCGCAATCGGAATTGTCCTTTTGCTTG
TCATCTTACTAGTCAGTCTTGTTTCACTGAAACTGTCCGGTTCGTTTAAAGGGGAGGGATAA

Upstream 100 bases:

>100_bases
CGCAGGAAAAAACACCTAAGGAAGCCTTGGACGAGGCGGCAGAGCAATTAGAGAAATAGGAGAAGCCGCCCTATTTAACA
GTGAAAGCGGGGGAGCTTTT

Downstream 100 bases:

>100_bases
GCGTTGCGTAACAATCACATGTTTTCCGTGTACAGAGTCGCGTTTACCTTGTTTTTTATCATGCTGAGCCTGTTGTATAT
CTTTCCGATGATCTGTCTAT

Product: AraP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRPVKTETAQTVSAVRKKPRRRNVLYSKKAAPYLFTAPFIISFLVFFLYPIISVFIMSFQRILPGEITFVGFSNYTALLN
PTFYTALFNTLEYTFWTLIVLIPVPLLLAVILNSKLVRFRNVFKSALFVPALTSTIVAGIIFRLMFGEMNTSLANELMMK
LGASPQNWLNNKGTGMFLMVLLASWRWMGINILYFLAGLQNVPKELYEAAEIDGASTWKKFRHITLPFLKPVSVYVLTIS
IIGGFRMFEESYVLWQNNSPGNIGLTLVGYLYQQGLAYNEMGYGAAIGIVLLLVILLVSLVSLKLSGSFKGEG

Sequences:

>Translated_313_residues
MRPVKTETAQTVSAVRKKPRRRNVLYSKKAAPYLFTAPFIISFLVFFLYPIISVFIMSFQRILPGEITFVGFSNYTALLN
PTFYTALFNTLEYTFWTLIVLIPVPLLLAVILNSKLVRFRNVFKSALFVPALTSTIVAGIIFRLMFGEMNTSLANELMMK
LGASPQNWLNNKGTGMFLMVLLASWRWMGINILYFLAGLQNVPKELYEAAEIDGASTWKKFRHITLPFLKPVSVYVLTIS
IIGGFRMFEESYVLWQNNSPGNIGLTLVGYLYQQGLAYNEMGYGAAIGIVLLLVILLVSLVSLKLSGSFKGEG
>Mature_313_residues
MRPVKTETAQTVSAVRKKPRRRNVLYSKKAAPYLFTAPFIISFLVFFLYPIISVFIMSFQRILPGEITFVGFSNYTALLN
PTFYTALFNTLEYTFWTLIVLIPVPLLLAVILNSKLVRFRNVFKSALFVPALTSTIVAGIIFRLMFGEMNTSLANELMMK
LGASPQNWLNNKGTGMFLMVLLASWRWMGINILYFLAGLQNVPKELYEAAEIDGASTWKKFRHITLPFLKPVSVYVLTIS
IIGGFRMFEESYVLWQNNSPGNIGLTLVGYLYQQGLAYNEMGYGAAIGIVLLLVILLVSLVSLKLSGSFKGEG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=266, Percent_Identity=35.3383458646617, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1789861, Length=285, Percent_Identity=26.3157894736842, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1790465, Length=267, Percent_Identity=24.3445692883895, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35184; Mature: 35184

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPVKTETAQTVSAVRKKPRRRNVLYSKKAAPYLFTAPFIISFLVFFLYPIISVFIMSFQ
CCCCCHHHHHHHHHHHHCCHHCCCCHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
RILPGEITFVGFSNYTALLNPTFYTALFNTLEYTFWTLIVLIPVPLLLAVILNSKLVRFR
HHCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVFKSALFVPALTSTIVAGIIFRLMFGEMNTSLANELMMKLGASPQNWLNNKGTGMFLMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHH
LLASWRWMGINILYFLAGLQNVPKELYEAAEIDGASTWKKFRHITLPFLKPVSVYVLTIS
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
IIGGFRMFEESYVLWQNNSPGNIGLTLVGYLYQQGLAYNEMGYGAAIGIVLLLVILLVSL
HHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VSLKLSGSFKGEG
HHHHHCCCCCCCC
>Mature Secondary Structure
MRPVKTETAQTVSAVRKKPRRRNVLYSKKAAPYLFTAPFIISFLVFFLYPIISVFIMSFQ
CCCCCHHHHHHHHHHHHCCHHCCCCHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
RILPGEITFVGFSNYTALLNPTFYTALFNTLEYTFWTLIVLIPVPLLLAVILNSKLVRFR
HHCCCCEEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVFKSALFVPALTSTIVAGIIFRLMFGEMNTSLANELMMKLGASPQNWLNNKGTGMFLMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHH
LLASWRWMGINILYFLAGLQNVPKELYEAAEIDGASTWKKFRHITLPFLKPVSVYVLTIS
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
IIGGFRMFEESYVLWQNNSPGNIGLTLVGYLYQQGLAYNEMGYGAAIGIVLLLVILLVSL
HHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VSLKLSGSFKGEG
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]