Click here to switch to the map view.

The map label for this gene is yshB [H]

Identifier: 154686995

GI number: 154686995

Start: 2689108

End: 2689641

Strand: Reverse

Name: yshB [H]

Synonym: RBAM_025670

Alternate gene names: 154686995

Gene position: 2689641-2689108 (Counterclockwise)

Preceding gene: 154686996

Following gene: 154686994

Centisome position: 68.64

GC content: 45.88

Gene sequence:

>534_bases
ATGATAGATATCATCATCTTAGTTTTGCTCTTAATGGGCACATTGCTTGGATTAAAAAGAGGATTTATCCTCCAATTTAT
ATATTTAACGAGTTTCATCCTCTCGATTGCGTTTGCGGCGCTTTTTTACAAAAACCTGGCCCCGCATCTGAGCTTTATAC
CCGCGCCTGATTTTTCCGGCGGGCAGGCGGCTTTGTCTTTTATTAAAGGAAACGTAGAGACGGCTTATTACAACGCGATC
GCGTTTGTCATTTTGTTTATCATCGCAAAGATTCTGCTCCGGATTATCGGAGCGGCGCTTAATATCATCGCCAGCATTCC
GGTCATTAAACAGATCAACAAACTGCTGGGCGGGGTGCTTGGGTTTCTGGAAGTCTATTTATTTGCGTTTATCCTGTTAT
ACGTCGCATCCGTACTGCCGGTAAGCGCGCTTCAGGATATGCTCGCACAATCGACGCTTGCAAATATCATCACACATCAT
ACGCCGTATCTGTCAGGGCTCCTGCAAGAACTGTGGGCCCAGTACGGGGCATAA

Upstream 100 bases:

>100_bases
GCTGTATTGACTGCGGTCAATGTCGTGCATGATTATATGAAACTGCAAGAAAAATATGAAATACTGGAGCGGCAGCTTAA
AGAAAAGGAATGAACACCAT

Downstream 100 bases:

>100_bases
AAAACTTCTCTTGACCGGAGAAGTTTTTTTCAAGCTCTGCGTCAGTTGTGCCGGAGGAGAAAAATTTGTATGATGAAAAG
CAGGAAACGACTGGGGGTTA

Product: YshB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MIDIIILVLLLMGTLLGLKRGFILQFIYLTSFILSIAFAALFYKNLAPHLSFIPAPDFSGGQAALSFIKGNVETAYYNAI
AFVILFIIAKILLRIIGAALNIIASIPVIKQINKLLGGVLGFLEVYLFAFILLYVASVLPVSALQDMLAQSTLANIITHH
TPYLSGLLQELWAQYGA

Sequences:

>Translated_177_residues
MIDIIILVLLLMGTLLGLKRGFILQFIYLTSFILSIAFAALFYKNLAPHLSFIPAPDFSGGQAALSFIKGNVETAYYNAI
AFVILFIIAKILLRIIGAALNIIASIPVIKQINKLLGGVLGFLEVYLFAFILLYVASVLPVSALQDMLAQSTLANIITHH
TPYLSGLLQELWAQYGA
>Mature_177_residues
MIDIIILVLLLMGTLLGLKRGFILQFIYLTSFILSIAFAALFYKNLAPHLSFIPAPDFSGGQAALSFIKGNVETAYYNAI
AFVILFIIAKILLRIIGAALNIIASIPVIKQINKLLGGVLGFLEVYLFAFILLYVASVLPVSALQDMLAQSTLANIITHH
TPYLSGLLQELWAQYGA

Specific function: Unknown

COG id: COG1286

COG function: function code R; Uncharacterized membrane protein, required for colicin V production

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003825 [H]

Pfam domain/function: PF02674 Colicin_V [H]

EC number: NA

Molecular weight: Translated: 19317; Mature: 19317

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDIIILVLLLMGTLLGLKRGFILQFIYLTSFILSIAFAALFYKNLAPHLSFIPAPDFSG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GQAALSFIKGNVETAYYNAIAFVILFIIAKILLRIIGAALNIIASIPVIKQINKLLGGVL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFLEVYLFAFILLYVASVLPVSALQDMLAQSTLANIITHHTPYLSGLLQELWAQYGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIDIIILVLLLMGTLLGLKRGFILQFIYLTSFILSIAFAALFYKNLAPHLSFIPAPDFSG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GQAALSFIKGNVETAYYNAIAFVILFIIAKILLRIIGAALNIIASIPVIKQINKLLGGVL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFLEVYLFAFILLYVASVLPVSALQDMLAQSTLANIITHHTPYLSGLLQELWAQYGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]