Click here to switch to the map view.

The map label for this gene is yshC [H]

Identifier: 154686994

GI number: 154686994

Start: 2687290

End: 2689002

Strand: Reverse

Name: yshC [H]

Synonym: RBAM_025660

Alternate gene names: 154686994

Gene position: 2689002-2687290 (Counterclockwise)

Preceding gene: 154686995

Following gene: 154686993

Centisome position: 68.62

GC content: 49.68

Gene sequence:

>1713_bases
ATGCATAAAAAAGATATCATCAGGCTGCTTGAAACGATTGCGGTCTATATGGAACTGAAAGGGGACAACCCGTTTAAAAT
ATCAGCCTTCCGAAAAGCGGCAGCGGCGCTTGAGCAGGATGACCGCAGCCTGTCGGAAATCGACGACATGATGTCTTTAT
CCGGAATCGGAAAAGGCACCTACGGCGTCATTCGTGAATATATGCAGGAAGGTGTGTCCGGCACGCTTCTCCAATTGCAG
AAAGAAGTTCCGGAAGGCTTGGTTCCTCTTTTGAAGCTTCCGGGCCTCGGCGGCAAAAAAATCGCCAAGCTGTATCAGGA
ACTGGGCGTTCATGACGCGGAATCGCTGAAAGAAGCATGCGAGCAGCAAAAAGTACAGGGGCTCGCCGGTTTCGGCAAAA
AAACGGAGGAGAAAATCCTCCAGGCTCTCGGAGAAGCCGGAAAACAGCCGGAACGGTTTCCGATCGGCTATGCGCTCAGC
ATTGCTTCAGTAATTGAAGAACATTTGGCCCGGCTGACGGATATTCAGAAATATTCCCGGGCCGGCAGTCTCAGAAGAGC
GCGGGAAACCGTAAAAGATCTCGATTACATTATCGCTACAGATCATCCGGAGGCTGTCAGAGAACAGCTTCTTTCCCTCC
CGAACGTAAAAGACGTGATAGCGAGCGGGGATACAAAAGTATCACTCATCCTGACCTTTGAATATGAGATGAGTGTGGAT
TTCCGGCTTGTGACAGAGGAACAGTTTGCCACCACACTGCATCATTTTACCGGTTCTAAAGATCACAACATTAAAATGCG
CCAGCTGGCGAAAGAGCGCGGTGAACGGATCAGTGAATACGGAGTAGAAACCATAGAAACGGGAGACGTCAAAACATTCC
CGAGCGAAGAAGCGTTTTACGCCCACTTCGGTCTGCCGTTTATTCCTCCTGAGCTCAGAGAAAGCGGGCAGGAGGTCGAC
ACGTACCGGGAAGAAACGGATCTTGTGGAGCATAAAGCGATAAAAGGCGATCTCCACATGCACTCAGCCTGGAGTGACGG
CGCTTTTTCCATCAGAGAAATGGCAGAAGCGTGTATGGCAAAAGGCTATCAGTACATGGCGATCACCGACCATTCCCAAT
ATTTAAAGGTAGCCAACGGGTTAACGGCCGAACGGCTCAAAAAACAGGCGGAAGAAATTGACGCGTTAAATGCTGAATTT
GAAAATTTTCATATTTTTAAAGGCGTAGAAATGGACATTCTCCCCGACGGTTCGCTCGATTATGATGACAGTGTTCTGTC
TGAAATGGATCTTGTCATCGCATCTATTCATTCAAGCTTCAGCCAGCCGGAACATGTCATTATGAAACGGCTTGAACAGG
CGCTGACGAATAAGCACGTGGACATTATCGCCCACCCGACGGGACGCCTGATCGGCAGACGGGCCGGCTATGAAGTCGAC
ATCGACATGCTGATTGAACTCGCCGCCAAAACAAATACGGCGCTTGAACTGAATGCAAACCCCGCGCGCCTCGATTTACG
GACTGAGCACCTGATCAAAGCAAATGAAAAAGGTGTGACTCTGGTCATTAATACCGATGCCCATAATATCGAGATGCTCG
ATGATATGAAAACGGGCGTGACCGCTGCGCGCAAAGGCTGGACGGAAACAAAACATGTGTTAAACGCCCGGCCGCTACAC
GAGGTCAAAGCATTTCTGACGCGCAATGATTAA

Upstream 100 bases:

>100_bases
TTCTCTTGACCGGAGAAGTTTTTTTCAAGCTCTGCGTCAGTTGTGCCGGAGGAGAAAAATTTGTATGATGAAAAGCAGGA
AACGACTGGGGGTTAACAGT

Downstream 100 bases:

>100_bases
GTAAGGAGGATCACAAAACCGTGCAGCAAAAAGTGTTATCATCACTTGAATTTCATAAAGTAAAAGAACAGATTACCGCA
CATGCCGCCTCATCGCTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: DNA polymerase type-X; 3'-5' exodeoxyribonuclease; 3'-5' exonuclease [H]

Number of amino acids: Translated: 570; Mature: 570

Protein sequence:

>570_residues
MHKKDIIRLLETIAVYMELKGDNPFKISAFRKAAAALEQDDRSLSEIDDMMSLSGIGKGTYGVIREYMQEGVSGTLLQLQ
KEVPEGLVPLLKLPGLGGKKIAKLYQELGVHDAESLKEACEQQKVQGLAGFGKKTEEKILQALGEAGKQPERFPIGYALS
IASVIEEHLARLTDIQKYSRAGSLRRARETVKDLDYIIATDHPEAVREQLLSLPNVKDVIASGDTKVSLILTFEYEMSVD
FRLVTEEQFATTLHHFTGSKDHNIKMRQLAKERGERISEYGVETIETGDVKTFPSEEAFYAHFGLPFIPPELRESGQEVD
TYREETDLVEHKAIKGDLHMHSAWSDGAFSIREMAEACMAKGYQYMAITDHSQYLKVANGLTAERLKKQAEEIDALNAEF
ENFHIFKGVEMDILPDGSLDYDDSVLSEMDLVIASIHSSFSQPEHVIMKRLEQALTNKHVDIIAHPTGRLIGRRAGYEVD
IDMLIELAAKTNTALELNANPARLDLRTEHLIKANEKGVTLVINTDAHNIEMLDDMKTGVTAARKGWTETKHVLNARPLH
EVKAFLTRND

Sequences:

>Translated_570_residues
MHKKDIIRLLETIAVYMELKGDNPFKISAFRKAAAALEQDDRSLSEIDDMMSLSGIGKGTYGVIREYMQEGVSGTLLQLQ
KEVPEGLVPLLKLPGLGGKKIAKLYQELGVHDAESLKEACEQQKVQGLAGFGKKTEEKILQALGEAGKQPERFPIGYALS
IASVIEEHLARLTDIQKYSRAGSLRRARETVKDLDYIIATDHPEAVREQLLSLPNVKDVIASGDTKVSLILTFEYEMSVD
FRLVTEEQFATTLHHFTGSKDHNIKMRQLAKERGERISEYGVETIETGDVKTFPSEEAFYAHFGLPFIPPELRESGQEVD
TYREETDLVEHKAIKGDLHMHSAWSDGAFSIREMAEACMAKGYQYMAITDHSQYLKVANGLTAERLKKQAEEIDALNAEF
ENFHIFKGVEMDILPDGSLDYDDSVLSEMDLVIASIHSSFSQPEHVIMKRLEQALTNKHVDIIAHPTGRLIGRRAGYEVD
IDMLIELAAKTNTALELNANPARLDLRTEHLIKANEKGVTLVINTDAHNIEMLDDMKTGVTAARKGWTETKHVLNARPLH
EVKAFLTRND
>Mature_570_residues
MHKKDIIRLLETIAVYMELKGDNPFKISAFRKAAAALEQDDRSLSEIDDMMSLSGIGKGTYGVIREYMQEGVSGTLLQLQ
KEVPEGLVPLLKLPGLGGKKIAKLYQELGVHDAESLKEACEQQKVQGLAGFGKKTEEKILQALGEAGKQPERFPIGYALS
IASVIEEHLARLTDIQKYSRAGSLRRARETVKDLDYIIATDHPEAVREQLLSLPNVKDVIASGDTKVSLILTFEYEMSVD
FRLVTEEQFATTLHHFTGSKDHNIKMRQLAKERGERISEYGVETIETGDVKTFPSEEAFYAHFGLPFIPPELRESGQEVD
TYREETDLVEHKAIKGDLHMHSAWSDGAFSIREMAEACMAKGYQYMAITDHSQYLKVANGLTAERLKKQAEEIDALNAEF
ENFHIFKGVEMDILPDGSLDYDDSVLSEMDLVIASIHSSFSQPEHVIMKRLEQALTNKHVDIIAHPTGRLIGRRAGYEVD
IDMLIELAAKTNTALELNANPARLDLRTEHLIKANEKGVTLVINTDAHNIEMLDDMKTGVTAARKGWTETKHVLNARPLH
EVKAFLTRND

Specific function: Strictly DNA-template-directed DNA polymerase, preferentially acting on DNA structures containing gaps from one to a few nucleotides and bearing a phosphate group at the 5' end of the downstream DNA. The fact that PolX is able to conduct filling of a sing

COG id: COG1796

COG function: function code L; DNA polymerase IV (family X)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the PHP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002054
- InterPro:   IPR010996
- InterPro:   IPR003583
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195
- InterPro:   IPR022311 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 63828; Mature: 63828

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKKDIIRLLETIAVYMELKGDNPFKISAFRKAAAALEQDDRSLSEIDDMMSLSGIGKGT
CCHHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
YGVIREYMQEGVSGTLLQLQKEVPEGLVPLLKLPGLGGKKIAKLYQELGVHDAESLKEAC
HHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
EQQKVQGLAGFGKKTEEKILQALGEAGKQPERFPIGYALSIASVIEEHLARLTDIQKYSR
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AGSLRRARETVKDLDYIIATDHPEAVREQLLSLPNVKDVIASGDTKVSLILTFEYEMSVD
HHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEEEEEECEE
FRLVTEEQFATTLHHFTGSKDHNIKMRQLAKERGERISEYGVETIETGDVKTFPSEEAFY
EEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEE
AHFGLPFIPPELRESGQEVDTYREETDLVEHKAIKGDLHMHSAWSDGAFSIREMAEACMA
EECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHH
KGYQYMAITDHSQYLKVANGLTAERLKKQAEEIDALNAEFENFHIFKGVEMDILPDGSLD
CCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCCC
YDDSVLSEMDLVIASIHSSFSQPEHVIMKRLEQALTNKHVDIIAHPTGRLIGRRAGYEVD
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCEEC
IDMLIELAAKTNTALELNANPARLDLRTEHLIKANEKGVTLVINTDAHNIEMLDDMKTGV
HHHHHHHHHCCCCEEEECCCCCEEECCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
TAARKGWTETKHVLNARPLHEVKAFLTRND
HHHHCCCHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MHKKDIIRLLETIAVYMELKGDNPFKISAFRKAAAALEQDDRSLSEIDDMMSLSGIGKGT
CCHHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
YGVIREYMQEGVSGTLLQLQKEVPEGLVPLLKLPGLGGKKIAKLYQELGVHDAESLKEAC
HHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
EQQKVQGLAGFGKKTEEKILQALGEAGKQPERFPIGYALSIASVIEEHLARLTDIQKYSR
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AGSLRRARETVKDLDYIIATDHPEAVREQLLSLPNVKDVIASGDTKVSLILTFEYEMSVD
HHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEEEEEECEE
FRLVTEEQFATTLHHFTGSKDHNIKMRQLAKERGERISEYGVETIETGDVKTFPSEEAFY
EEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEE
AHFGLPFIPPELRESGQEVDTYREETDLVEHKAIKGDLHMHSAWSDGAFSIREMAEACMA
EECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHH
KGYQYMAITDHSQYLKVANGLTAERLKKQAEEIDALNAEFENFHIFKGVEMDILPDGSLD
CCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCCC
YDDSVLSEMDLVIASIHSSFSQPEHVIMKRLEQALTNKHVDIIAHPTGRLIGRRAGYEVD
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCEEC
IDMLIELAAKTNTALELNANPARLDLRTEHLIKANEKGVTLVINTDAHNIEMLDDMKTGV
HHHHHHHHHCCCCEEEECCCCCEEECCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
TAARKGWTETKHVLNARPLHEVKAFLTRND
HHHHCCCHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]