| Definition | Bacillus amyloliquefaciens FZB42, complete genome. |
|---|---|
| Accession | NC_009725 |
| Length | 3,918,589 |
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The map label for this gene is ysiB [H]
Identifier: 154686988
GI number: 154686988
Start: 2680418
End: 2681197
Strand: Reverse
Name: ysiB [H]
Synonym: RBAM_025600
Alternate gene names: 154686988
Gene position: 2681197-2680418 (Counterclockwise)
Preceding gene: 154686989
Following gene: 154686987
Centisome position: 68.42
GC content: 52.31
Gene sequence:
>780_bases ATGAACAGCCTTTCGATGGCGGTAGAACAATCTGTTGCGGTGATCACCATTAATCATCAGCCGGCCAACGCGCTGTCCGG TGCGGTTTTAGACGAGTTGTCCGGTCTGTTCGACCGATGTGAAACAGATGACAGCGTCAGAAGCATCATCATTCGCGGTG AGGGGAAATTTTTCTCGGCGGGCGCCGATATAAAGGAATTTACGTCGCTTGAAAAACTTGAGCAATCTTCTGCCATGGCG GATAAAGGCCAGCAGCTGATGGAAAGAATTGAAGGGTTTCCGAAGCCCGTTATCGCAGCGATTCACGGCGCTGCGCTCGG AGGCGGTCTTGAGCTAGCCATGGCCTGCCATATCAGAATCGCTACATTAGATGCAAAGCTCGGCCTGCCCGAGCTGAATC TCGGCATTATTCCGGGCTTTGCCGGGACGCAGCGGCTTCCCCGGTACGTCGGTACGGCGAAAGCGCTTGAAATGATCGGC ACTTCAGAACCTGTGACCGGAGAAGAAGCGCTCAGCCTCGGTCTTGTCACGGTAGGCGCCGAACATGAGGAAGAGCTGCT GAAAAAGGCGAAAACGCTCGCGGGCAAGTTTGCGGAAAAAAGCCCGCAGTCGATGGCTTCTCTGCTTGAGCTCCTTTATT CAAACAAGATCTATTCTTATGACGGCGGCTTAAAGCTTGAAGCAAAGCGTTTTGGGGAAGCATTTGCATCAGATGACGCA AAAGAAGGCATTCAGGCATTTCTCGAAAAAAGAAAGCCTCAATTCGGTGGGCGAAGATAA
Upstream 100 bases:
>100_bases TGGGTGATGAACGATCAAAAATATGATCTTCCGGATTTGTCAGACAAGGTATTGGAGCTGTTGGTGTCAGGAATTCATCA AAACTAAAGGGGGTTGACGG
Downstream 100 bases:
>100_bases AGGGGATAAGATTATGAATCTATTTGTACTGATGAAACGGACGTTTGACACAGAAGAGAAAATCGTCATTGAAGCAGGAA AGATTCAGGAGGACGGGGCC
Product: enoyl-CoA hydratase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MNSLSMAVEQSVAVITINHQPANALSGAVLDELSGLFDRCETDDSVRSIIIRGEGKFFSAGADIKEFTSLEKLEQSSAMA DKGQQLMERIEGFPKPVIAAIHGAALGGGLELAMACHIRIATLDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALEMIG TSEPVTGEEALSLGLVTVGAEHEEELLKKAKTLAGKFAEKSPQSMASLLELLYSNKIYSYDGGLKLEAKRFGEAFASDDA KEGIQAFLEKRKPQFGGRR
Sequences:
>Translated_259_residues MNSLSMAVEQSVAVITINHQPANALSGAVLDELSGLFDRCETDDSVRSIIIRGEGKFFSAGADIKEFTSLEKLEQSSAMA DKGQQLMERIEGFPKPVIAAIHGAALGGGLELAMACHIRIATLDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALEMIG TSEPVTGEEALSLGLVTVGAEHEEELLKKAKTLAGKFAEKSPQSMASLLELLYSNKIYSYDGGLKLEAKRFGEAFASDDA KEGIQAFLEKRKPQFGGRR >Mature_259_residues MNSLSMAVEQSVAVITINHQPANALSGAVLDELSGLFDRCETDDSVRSIIIRGEGKFFSAGADIKEFTSLEKLEQSSAMA DKGQQLMERIEGFPKPVIAAIHGAALGGGLELAMACHIRIATLDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALEMIG TSEPVTGEEALSLGLVTVGAEHEEELLKKAKTLAGKFAEKSPQSMASLLELLYSNKIYSYDGGLKLEAKRFGEAFASDDA KEGIQAFLEKRKPQFGGRR
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=248, Percent_Identity=38.7096774193548, Blast_Score=143, Evalue=1e-34, Organism=Homo sapiens, GI20127408, Length=178, Percent_Identity=38.7640449438202, Blast_Score=125, Evalue=5e-29, Organism=Homo sapiens, GI68989263, Length=279, Percent_Identity=31.1827956989247, Blast_Score=125, Evalue=5e-29, Organism=Homo sapiens, GI4502327, Length=256, Percent_Identity=38.671875, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI31542718, Length=249, Percent_Identity=31.7269076305221, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI70995211, Length=242, Percent_Identity=30.5785123966942, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI213417737, Length=239, Percent_Identity=25.9414225941423, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI157694516, Length=239, Percent_Identity=25.9414225941423, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI261878539, Length=181, Percent_Identity=31.4917127071823, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI157694520, Length=200, Percent_Identity=27, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI150378541, Length=257, Percent_Identity=28.4046692607004, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI37594469, Length=238, Percent_Identity=27.7310924369748, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI37594471, Length=238, Percent_Identity=27.7310924369748, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI116235487, Length=158, Percent_Identity=27.8481012658228, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1787659, Length=259, Percent_Identity=38.6100386100386, Blast_Score=166, Evalue=1e-42, Organism=Escherichia coli, GI1788682, Length=191, Percent_Identity=42.9319371727749, Blast_Score=135, Evalue=2e-33, Organism=Escherichia coli, GI221142681, Length=263, Percent_Identity=34.2205323193916, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1790281, Length=173, Percent_Identity=38.728323699422, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI87082183, Length=253, Percent_Identity=32.0158102766798, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787660, Length=259, Percent_Identity=30.1158301158301, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788597, Length=254, Percent_Identity=28.740157480315, Blast_Score=76, Evalue=3e-15, Organism=Caenorhabditis elegans, GI25145438, Length=247, Percent_Identity=38.4615384615385, Blast_Score=150, Evalue=5e-37, Organism=Caenorhabditis elegans, GI17554946, Length=258, Percent_Identity=39.5348837209302, Blast_Score=148, Evalue=2e-36, Organism=Caenorhabditis elegans, GI17558304, Length=170, Percent_Identity=40, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17540714, Length=197, Percent_Identity=36.0406091370558, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI25144276, Length=155, Percent_Identity=40.6451612903226, Blast_Score=113, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17508951, Length=155, Percent_Identity=40.6451612903226, Blast_Score=113, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17508953, Length=155, Percent_Identity=40.6451612903226, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17534483, Length=246, Percent_Identity=29.2682926829268, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17536985, Length=253, Percent_Identity=28.4584980237154, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17560910, Length=243, Percent_Identity=31.6872427983539, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17540306, Length=257, Percent_Identity=29.9610894941634, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17549921, Length=215, Percent_Identity=28.3720930232558, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI25141363, Length=172, Percent_Identity=28.4883720930233, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6320241, Length=212, Percent_Identity=27.8301886792453, Blast_Score=77, Evalue=3e-15, Organism=Drosophila melanogaster, GI20129971, Length=249, Percent_Identity=38.1526104417671, Blast_Score=142, Evalue=3e-34, Organism=Drosophila melanogaster, GI24653477, Length=249, Percent_Identity=38.1526104417671, Blast_Score=142, Evalue=3e-34, Organism=Drosophila melanogaster, GI24653139, Length=255, Percent_Identity=36.078431372549, Blast_Score=132, Evalue=2e-31, Organism=Drosophila melanogaster, GI24583077, Length=178, Percent_Identity=41.5730337078652, Blast_Score=104, Evalue=4e-23, Organism=Drosophila melanogaster, GI24583079, Length=178, Percent_Identity=41.5730337078652, Blast_Score=104, Evalue=4e-23, Organism=Drosophila melanogaster, GI19921000, Length=178, Percent_Identity=41.5730337078652, Blast_Score=104, Evalue=4e-23, Organism=Drosophila melanogaster, GI19920382, Length=253, Percent_Identity=30.4347826086957, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI19922422, Length=248, Percent_Identity=29.8387096774194, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI21357171, Length=178, Percent_Identity=33.1460674157303, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24583165, Length=195, Percent_Identity=30.2564102564103, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI19921018, Length=197, Percent_Identity=30.9644670050761, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24650670, Length=179, Percent_Identity=31.8435754189944, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.17 [H]
Molecular weight: Translated: 27684; Mature: 27684
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSLSMAVEQSVAVITINHQPANALSGAVLDELSGLFDRCETDDSVRSIIIRGEGKFFSA CCCHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCEEEC GADIKEFTSLEKLEQSSAMADKGQQLMERIEGFPKPVIAAIHGAALGGGLELAMACHIRI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHEEEE ATLDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALEMIGTSEPVTGEEALSLGLVTVGA EEEEHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEECC EHEEELLKKAKTLAGKFAEKSPQSMASLLELLYSNKIYSYDGGLKLEAKRFGEAFASDDA CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCEEEHHHHHHHHHCCCHH KEGIQAFLEKRKPQFGGRR HHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MNSLSMAVEQSVAVITINHQPANALSGAVLDELSGLFDRCETDDSVRSIIIRGEGKFFSA CCCHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCEEEC GADIKEFTSLEKLEQSSAMADKGQQLMERIEGFPKPVIAAIHGAALGGGLELAMACHIRI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHEEEE ATLDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALEMIGTSEPVTGEEALSLGLVTVGA EEEEHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEECC EHEEELLKKAKTLAGKFAEKSPQSMASLLELLYSNKIYSYDGGLKLEAKRFGEAFASDDA CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCEEEHHHHHHHHHCCCHH KEGIQAFLEKRKPQFGGRR HHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969504; 9384377 [H]