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The map label for this gene is ysiA [H]

Identifier: 154686989

GI number: 154686989

Start: 2681211

End: 2681801

Strand: Reverse

Name: ysiA [H]

Synonym: RBAM_025610

Alternate gene names: 154686989

Gene position: 2681801-2681211 (Counterclockwise)

Preceding gene: 154686990

Following gene: 154686988

Centisome position: 68.44

GC content: 43.32

Gene sequence:

>591_bases
ATGACATTGAACCAAAAACGGCCAAAGTATATGCAGATTATTGATGCAGCAGTAGAAGTCATAGCGGAAAACGGCTATCA
CCAATCACAGGTGTCCAAAATCGCCAAGCAGGCCGGCGTTGCGGACGGCACCATCTATTTATATTTCAAAAACAAAGAGG
ATATACTCATTTCTCTTTTTAAAGAAAAGATGGGCCAGTTCATTGAACGCATGGAAGAAGAAGTGAAAGAAAAAACGACG
GCAAAAGAAAAACTCGCCCTCGTTATTAAGCAGCATTTCACACTGCTCGGCAATGACCGCCACCTCGCGATTGTGACCCA
GCTTGAGCTCAGACAGTCAAATATCAAGCTGCGCCTGAAAATCAATGATATTTTAAAAGGTTATTTAAACATGCTGGACA
CCATTTTGACCGAAGGAATCAAGTCGGGGGAATGGAAAGACAATCTCGACGTCCGCCTCGCCCGGCAGATGATATTCGGG
ACGATAGATGAAACAGTGACAACATGGGTGATGAACGATCAAAAATATGATCTTCCGGATTTGTCAGACAAGGTATTGGA
GCTGTTGGTGTCAGGAATTCATCAAAACTAA

Upstream 100 bases:

>100_bases
GAAAATAAGGTGCCTTAAAAGAAAAACTTGACAAAATCCGGATTCCTTTTTATCATGAAGTTATGAATGAATAGTCATTC
ATTTATCGAAGGAAGGAACG

Downstream 100 bases:

>100_bases
AGGGGGTTGACGGATGAACAGCCTTTCGATGGCGGTAGAACAATCTGTTGCGGTGATCACCATTAATCATCAGCCGGCCA
ACGCGCTGTCCGGTGCGGTT

Product: YsiA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTLNQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEEVKEKTT
AKEKLALVIKQHFTLLGNDRHLAIVTQLELRQSNIKLRLKINDILKGYLNMLDTILTEGIKSGEWKDNLDVRLARQMIFG
TIDETVTTWVMNDQKYDLPDLSDKVLELLVSGIHQN

Sequences:

>Translated_196_residues
MTLNQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEEVKEKTT
AKEKLALVIKQHFTLLGNDRHLAIVTQLELRQSNIKLRLKINDILKGYLNMLDTILTEGIKSGEWKDNLDVRLARQMIFG
TIDETVTTWVMNDQKYDLPDLSDKVLELLVSGIHQN
>Mature_195_residues
TLNQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEEVKEKTTA
KEKLALVIKQHFTLLGNDRHLAIVTQLELRQSNIKLRLKINDILKGYLNMLDTILTEGIKSGEWKDNLDVRLARQMIFGT
IDETVTTWVMNDQKYDLPDLSDKVLELLVSGIHQN

Specific function: Transcriptional regulator in fatty acid degradation. Represses transcription of genes required for fatty acid transport and beta-oxidation, including acdA, fadA, fadB, fadE, fadF, fadG, fadH, fadM, fadN, lcfA and lcfB. Binding of FadR to DNA is specifical

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR013570 [H]

Pfam domain/function: PF08359 TetR_C_4; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22582; Mature: 22450

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLF
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHH
KEKMGQFIERMEEEVKEKTTAKEKLALVIKQHFTLLGNDRHLAIVTQLELRQSNIKLRLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHCCEEEEEE
INDILKGYLNMLDTILTEGIKSGEWKDNLDVRLARQMIFGTIDETVTTWVMNDQKYDLPD
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
LSDKVLELLVSGIHQN
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLNQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLF
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHH
KEKMGQFIERMEEEVKEKTTAKEKLALVIKQHFTLLGNDRHLAIVTQLELRQSNIKLRLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHCCEEEEEE
INDILKGYLNMLDTILTEGIKSGEWKDNLDVRLARQMIFGTIDETVTTWVMNDQKYDLPD
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
LSDKVLELLVSGIHQN
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]