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The map label for this gene is sdhC [H]

Identifier: 154686980

GI number: 154686980

Start: 2671541

End: 2672149

Strand: Reverse

Name: sdhC [H]

Synonym: RBAM_025520

Alternate gene names: 154686980

Gene position: 2672149-2671541 (Counterclockwise)

Preceding gene: 154686982

Following gene: 154686979

Centisome position: 68.19

GC content: 44.17

Gene sequence:

>609_bases
ATGTCTGGGAACAGAGAGTTTTATTTTCGAAGATTGCATTCCTTGCTCGGTGTTATTCCGGTCGGCATCTTTTTGATCCA
GCATTTAGTCGTCAACCAATTTGCCGCAAGGGGAGCGGATGCGTTTAACAAGGCGGCCGGCTTTATGGACAGTCTGCCGT
TCAGGTATGCGTTAGAAATTTTTATTATTTTCTTACCTTTAATTTATCATGCGGTTTACGGTGTGTACATAGCATTTACT
GCGAAAAACAACGCTGGCCACTACAGTTATTTCAGAAACTGGATGTTTGTGCTTCAACGTGTCACTGGTATTCTCACCCT
TATTTTCGTCAGCTGGCATGTGTGGCAGACGCGGATTGCCGCGCAGATGGGCGCTGAAGTCAACTTCGATATGATGGCGA
ATATTTTGAGCTCGCCGTTTATGCTCGGCTTTTACATTGTAGGCGTTTTATCGGTCATTTTTCACTTTTCAAACGGCTTA
TGGTCTTTTGCGGTCACATGGGGGATCACGGTCACGCCGCGTTCTCAAAGAATTTCGACTTACGTGACGCTGATTATATT
TTTAGCGCTTTCATACGTAGGTTTAAAAGCGATTTTTGCGTTTGTGTAA

Upstream 100 bases:

>100_bases
GAAATTGTCAATAAATTTTAATAAAGTGCTTACAATTGAAACGAAGTGGGGGCAGAGATTTTAGTACATTTCGCACTTAA
ATCAAACAGGGGGTAAAGTA

Downstream 100 bases:

>100_bases
GAGAACTAGATTACTAGAGGGAGAGGGGCTATCATGAGTCAATCAAGCATTATCGTAGTCGGCGGGGGTCTTGCCGGCCT
CATGGCGACAATTAAAGCAG

Product: hypothetical protein

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-558 [H]

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MSGNREFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARGADAFNKAAGFMDSLPFRYALEIFIIFLPLIYHAVYGVYIAFT
AKNNAGHYSYFRNWMFVLQRVTGILTLIFVSWHVWQTRIAAQMGAEVNFDMMANILSSPFMLGFYIVGVLSVIFHFSNGL
WSFAVTWGITVTPRSQRISTYVTLIIFLALSYVGLKAIFAFV

Sequences:

>Translated_202_residues
MSGNREFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARGADAFNKAAGFMDSLPFRYALEIFIIFLPLIYHAVYGVYIAFT
AKNNAGHYSYFRNWMFVLQRVTGILTLIFVSWHVWQTRIAAQMGAEVNFDMMANILSSPFMLGFYIVGVLSVIFHFSNGL
WSFAVTWGITVTPRSQRISTYVTLIIFLALSYVGLKAIFAFV
>Mature_201_residues
SGNREFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARGADAFNKAAGFMDSLPFRYALEIFIIFLPLIYHAVYGVYIAFTA
KNNAGHYSYFRNWMFVLQRVTGILTLIFVSWHVWQTRIAAQMGAEVNFDMMANILSSPFMLGFYIVGVLSVIFHFSNGLW
SFAVTWGITVTPRSQRISTYVTLIIFLALSYVGLKAIFAFV

Specific function: Di-heme cytochrome of the succinate dehydrogenase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b558 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011138
- InterPro:   IPR016002
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 23008; Mature: 22877

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNREFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARGADAFNKAAGFMDSLPFRYALEI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
FIIFLPLIYHAVYGVYIAFTAKNNAGHYSYFRNWMFVLQRVTGILTLIFVSWHVWQTRIA
HHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMGAEVNFDMMANILSSPFMLGFYIVGVLSVIFHFSNGLWSFAVTWGITVTPRSQRIST
HHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEECCCHHHHHH
YVTLIIFLALSYVGLKAIFAFV
HHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SGNREFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARGADAFNKAAGFMDSLPFRYALEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
FIIFLPLIYHAVYGVYIAFTAKNNAGHYSYFRNWMFVLQRVTGILTLIFVSWHVWQTRIA
HHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMGAEVNFDMMANILSSPFMLGFYIVGVLSVIFHFSNGLWSFAVTWGITVTPRSQRIST
HHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEECCCHHHHHH
YVTLIIFLALSYVGLKAIFAFV
HHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3086287; 8969504; 9384377; 3027051; 3036777; 2120540 [H]