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The map label for this gene is yrrO [H]

Identifier: 154686874

GI number: 154686874

Start: 2563465

End: 2564733

Strand: Reverse

Name: yrrO [H]

Synonym: RBAM_024440

Alternate gene names: 154686874

Gene position: 2564733-2563465 (Counterclockwise)

Preceding gene: 154686875

Following gene: 154686873

Centisome position: 65.45

GC content: 47.28

Gene sequence:

>1269_bases
ATGACAGCCGTAAATCAAACCATTTCCAAAGTCGTAAACGGAAAACGCGTCATTACGAAAAAACCTGAACTCCTTGCTCC
GGCAGGAAACCTTGAAAAATTAAAAATTGCCGTTCATTACGGAGCGGACGCGGTTTTTATCGGAGGACAGGAATACGGAC
TCCGCTCAAATGCGGATAACTTCTCAATAGAAGAAATCGCAGAGGGCGTAGAATTTGCCAAAAAATACGGGGCAAAAATA
TATGTGACAACAAACATTTTCGCCCATAATGAAAATATGGACGGTCTGGAAGAATACTTAAAAGCGTTGGGAGACGCAAA
AGTTGCCGGAATTATCGTCGCTGATCCGCTGATTATTGAAACATGCCGGAGAGTGGCCCCGGACGTAGAAATTCACCTCA
GCACACAGCAGTCCCTTTCCAACTGGAAAGCGGTGCAGTTCTGGAAAGAAGAAGGGCTTGACCGCGTAGTGCTTGCCCGT
GAAACGAGCGGACTGGAAATTAAAGAAATGAAGGAAAAGGTGGATATTGAAATTGAAACCTTTATCCACGGCGCCATGTG
TATCGCTTATTCAGGCCGATGCGTGCTGAGCAATCACATGACGGCCCGGGATTCCAACCGCGGCGGCTGCTGTCAGTCCT
GCCGCTGGGATTATGACCTGTATCAGACAGACGGTGCAAACGCGGTCGCGCTCTACGACGAAGAAGACGCTCCGTTTGCG
ATGAGCCCGAAAGATTTAAAATTGATTGAATCCATCCCGCAAATGATCGAGATGGGCATCGACAGCCTGAAAATTGAAGG
CCGGATGAAATCGATTCATTACGTTGCGACGGTTGTCAGCGTGTATCGCAAAGTCATCGACGCATACTGCGCTGATCCTG
AAAACTTTGTCATTCAAAAAGAATGGCTGGATGAGCTGGACAAATGTGCAAACCGGGATACCGCGCCTGCTTTCTTTGAA
GGCACGCCCGGGTATGAAGAGCAGATGTTCGGTGAACACGGAAAGAAAACAACATTTGATTTTGCCGGTCTCGTGCTCGC
GTATAACGAGGAAACTCAAATGGTGACGCTCCAGCAGCGCAATTTCTTTAAACAAGGTGACGAAGTGGAATTTTTCGGTC
CTGAAATCGACAATTTCACATTCACAATCGGCACTATTTGGGACGAAGACGGAAACGAGCTTGATGCTGCCCGCCATCCC
CTGCAAATCGTTACATTTAAAGTAGACAAAAAGATTTATCCGAGCAACATGATGAGAAAGGGGAAGTAA

Upstream 100 bases:

>100_bases
GCTGGATAGAGCGGATTGAAAGCATTCAGCCTGTGAACAGAAGCATCGATACAGGATTCTTCTTTAAAGAAACGGTCTAT
TAAAAAGGAGGGTGCAACGG

Downstream 100 bases:

>100_bases
TCACCAATGGGTAAGAGTCCTGTAGTTATAGGCATCGCAGGAGGTTCCGGATCAGGAAAAACAAGCGTCACCCGTTCCAT
CTATGAACAGTTTAAAGGAC

Product: YrrO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MTAVNQTISKVVNGKRVITKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYGLRSNADNFSIEEIAEGVEFAKKYGAKI
YVTTNIFAHNENMDGLEEYLKALGDAKVAGIIVADPLIIETCRRVAPDVEIHLSTQQSLSNWKAVQFWKEEGLDRVVLAR
ETSGLEIKEMKEKVDIEIETFIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQTDGANAVALYDEEDAPFA
MSPKDLKLIESIPQMIEMGIDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPENFVIQKEWLDELDKCANRDTAPAFFE
GTPGYEEQMFGEHGKKTTFDFAGLVLAYNEETQMVTLQQRNFFKQGDEVEFFGPEIDNFTFTIGTIWDEDGNELDAARHP
LQIVTFKVDKKIYPSNMMRKGK

Sequences:

>Translated_422_residues
MTAVNQTISKVVNGKRVITKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYGLRSNADNFSIEEIAEGVEFAKKYGAKI
YVTTNIFAHNENMDGLEEYLKALGDAKVAGIIVADPLIIETCRRVAPDVEIHLSTQQSLSNWKAVQFWKEEGLDRVVLAR
ETSGLEIKEMKEKVDIEIETFIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQTDGANAVALYDEEDAPFA
MSPKDLKLIESIPQMIEMGIDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPENFVIQKEWLDELDKCANRDTAPAFFE
GTPGYEEQMFGEHGKKTTFDFAGLVLAYNEETQMVTLQQRNFFKQGDEVEFFGPEIDNFTFTIGTIWDEDGNELDAARHP
LQIVTFKVDKKIYPSNMMRKGK
>Mature_421_residues
TAVNQTISKVVNGKRVITKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYGLRSNADNFSIEEIAEGVEFAKKYGAKIY
VTTNIFAHNENMDGLEEYLKALGDAKVAGIIVADPLIIETCRRVAPDVEIHLSTQQSLSNWKAVQFWKEEGLDRVVLARE
TSGLEIKEMKEKVDIEIETFIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQTDGANAVALYDEEDAPFAM
SPKDLKLIESIPQMIEMGIDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPENFVIQKEWLDELDKCANRDTAPAFFEG
TPGYEEQMFGEHGKKTTFDFAGLVLAYNEETQMVTLQQRNFFKQGDEVEFFGPEIDNFTFTIGTIWDEDGNELDAARHPL
QIVTFKVDKKIYPSNMMRKGK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=421, Percent_Identity=33.4916864608076, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI87081910, Length=272, Percent_Identity=38.2352941176471, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1789548, Length=318, Percent_Identity=34.2767295597484, Blast_Score=162, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 47464; Mature: 47333

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVNQTISKVVNGKRVITKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYGLRSNADN
CCCHHHHHHHHHCCCEEEECCCCEECCCCCCEEEEEEEEECCCEEEECCCCCCCCCCCCC
FSIEEIAEGVEFAKKYGAKIYVTTNIFAHNENMDGLEEYLKALGDAKVAGIIVADPLIIE
CCHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECHHHHH
TCRRVAPDVEIHLSTQQSLSNWKAVQFWKEEGLDRVVLARETSGLEIKEMKEKVDIEIET
HHHHHCCCEEEEEECHHHHCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCEEEEH
FIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQTDGANAVALYDEEDAPFA
HHHHEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCC
MSPKDLKLIESIPQMIEMGIDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPENFVIQK
CCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEH
EWLDELDKCANRDTAPAFFEGTPGYEEQMFGEHGKKTTFDFAGLVLAYNEETQMVTLQQR
HHHHHHHHHCCCCCCCCEECCCCCHHHHHHHCCCCCCEEEEEEEEEEECCCCEEEEEEHH
NFFKQGDEVEFFGPEIDNFTFTIGTIWDEDGNELDAARHPLQIVTFKVDKKIYPSNMMRK
HHHCCCCCEEEECCCCCCEEEEEEEEECCCCCCCHHHCCCEEEEEEEECCEECCCHHHCC
GK
CC
>Mature Secondary Structure 
TAVNQTISKVVNGKRVITKKPELLAPAGNLEKLKIAVHYGADAVFIGGQEYGLRSNADN
CCHHHHHHHHHCCCEEEECCCCEECCCCCCEEEEEEEEECCCEEEECCCCCCCCCCCCC
FSIEEIAEGVEFAKKYGAKIYVTTNIFAHNENMDGLEEYLKALGDAKVAGIIVADPLIIE
CCHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECHHHHH
TCRRVAPDVEIHLSTQQSLSNWKAVQFWKEEGLDRVVLARETSGLEIKEMKEKVDIEIET
HHHHHCCCEEEEEECHHHHCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCEEEEH
FIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLYQTDGANAVALYDEEDAPFA
HHHHEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCC
MSPKDLKLIESIPQMIEMGIDSLKIEGRMKSIHYVATVVSVYRKVIDAYCADPENFVIQK
CCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEH
EWLDELDKCANRDTAPAFFEGTPGYEEQMFGEHGKKTTFDFAGLVLAYNEETQMVTLQQR
HHHHHHHHHCCCCCCCCEECCCCCHHHHHHHCCCCCCEEEEEEEEEEECCCCEEEEEEHH
NFFKQGDEVEFFGPEIDNFTFTIGTIWDEDGNELDAARHPLQIVTFKVDKKIYPSNMMRK
HHHCCCCCEEEECCCCCCEEEEEEEEECCCCCCCHHHCCCEEEEEEEECCEECCCHHHCC
GK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]