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The map label for this gene is udk

Identifier: 154686873

GI number: 154686873

Start: 2562823

End: 2563458

Strand: Reverse

Name: udk

Synonym: RBAM_024430

Alternate gene names: 154686873

Gene position: 2563458-2562823 (Counterclockwise)

Preceding gene: 154686874

Following gene: 154686872

Centisome position: 65.42

GC content: 43.55

Gene sequence:

>636_bases
ATGGGTAAGAGTCCTGTAGTTATAGGCATCGCAGGAGGTTCCGGATCAGGAAAAACAAGCGTCACCCGTTCCATCTATGA
ACAGTTTAAAGGACACTCGATTTTAATGATCCAGCAAGACCTTTATTATAAAGACCAAAGCCATCTTCCGTTTGAAGAAA
GGCTGAACACAAACTATGATCACCCGCTCGCATTTGATAATGACTATTTAATCGAGCATATTCAAGAGCTTTTGAATTAC
CGGCCGATAGAAAAGCCGATTTATGATTATAAACTGCATACGCGTTCTGAGGAAACCATTCCGGTTGAGCCGAAGGATGT
CATTATTCTGGAAGGCATTCTCGTTCTCGAAGATAAAAGACTTCGCGACCTCATGGATATGAAACTTTATGTCGACACGG
ACGCGGATCTCCGTATCATCAGACGGATTATGAGAGATATTAACGAAAGAGGCCGCTCGATCGATTCTGTCATTGAGCAG
TATGTGTCCGTCGTCAGACCGATGCACAATCAGTTTGTTGAACCGACGAAACGCTACGCGGACATCATTATTCCGGAAGG
CGGACAAAACCACGTCGCGATTGATCTGATGGTCACGAAGATTCAAACGATCCTTGAACAAAATGCAATTTTGTAA

Upstream 100 bases:

>100_bases
CGAGCTTGATGCTGCCCGCCATCCCCTGCAAATCGTTACATTTAAAGTAGACAAAAAGATTTATCCGAGCAACATGATGA
GAAAGGGGAAGTAATCACCA

Downstream 100 bases:

>100_bases
TACCATAGCATAGACATAAATAACTCAGACCATATTATGTATAGGCTGGAAGGGAATGAGACAGTTCCCTTCTTTCCCTG
TTTATAAACCGAAACATTTG

Product: uridine kinase

Products: NA

Alternate protein names: Cytidine monophosphokinase; Uridine monophosphokinase

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MGKSPVVIGIAGGSGSGKTSVTRSIYEQFKGHSILMIQQDLYYKDQSHLPFEERLNTNYDHPLAFDNDYLIEHIQELLNY
RPIEKPIYDYKLHTRSEETIPVEPKDVIILEGILVLEDKRLRDLMDMKLYVDTDADLRIIRRIMRDINERGRSIDSVIEQ
YVSVVRPMHNQFVEPTKRYADIIIPEGGQNHVAIDLMVTKIQTILEQNAIL

Sequences:

>Translated_211_residues
MGKSPVVIGIAGGSGSGKTSVTRSIYEQFKGHSILMIQQDLYYKDQSHLPFEERLNTNYDHPLAFDNDYLIEHIQELLNY
RPIEKPIYDYKLHTRSEETIPVEPKDVIILEGILVLEDKRLRDLMDMKLYVDTDADLRIIRRIMRDINERGRSIDSVIEQ
YVSVVRPMHNQFVEPTKRYADIIIPEGGQNHVAIDLMVTKIQTILEQNAIL
>Mature_210_residues
GKSPVVIGIAGGSGSGKTSVTRSIYEQFKGHSILMIQQDLYYKDQSHLPFEERLNTNYDHPLAFDNDYLIEHIQELLNYR
PIEKPIYDYKLHTRSEETIPVEPKDVIILEGILVLEDKRLRDLMDMKLYVDTDADLRIIRRIMRDINERGRSIDSVIEQY
VSVVRPMHNQFVEPTKRYADIIIPEGGQNHVAIDLMVTKIQTILEQNAIL

Specific function: Pyrimidine salvage pathway. [C]

COG id: COG0572

COG function: function code F; Uridine kinase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the uridine kinase family

Homologues:

Organism=Homo sapiens, GI18699734, Length=216, Percent_Identity=41.2037037037037, Blast_Score=189, Evalue=2e-48,
Organism=Homo sapiens, GI301129207, Length=207, Percent_Identity=42.512077294686, Blast_Score=180, Evalue=7e-46,
Organism=Homo sapiens, GI57863312, Length=207, Percent_Identity=42.512077294686, Blast_Score=180, Evalue=8e-46,
Organism=Homo sapiens, GI13899253, Length=213, Percent_Identity=39.4366197183099, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI209863022, Length=183, Percent_Identity=32.7868852459016, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI87082034, Length=205, Percent_Identity=54.1463414634146, Blast_Score=228, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI17539894, Length=207, Percent_Identity=41.0628019323672, Blast_Score=174, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17539892, Length=207, Percent_Identity=41.0628019323672, Blast_Score=174, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI71981181, Length=213, Percent_Identity=35.6807511737089, Blast_Score=138, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6324339, Length=195, Percent_Identity=34.8717948717949, Blast_Score=111, Evalue=7e-26,
Organism=Saccharomyces cerevisiae, GI6320223, Length=216, Percent_Identity=27.3148148148148, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24649624, Length=215, Percent_Identity=41.8604651162791, Blast_Score=175, Evalue=1e-44,
Organism=Drosophila melanogaster, GI221458995, Length=219, Percent_Identity=40.6392694063927, Blast_Score=175, Evalue=2e-44,
Organism=Drosophila melanogaster, GI28573516, Length=204, Percent_Identity=40.6862745098039, Blast_Score=167, Evalue=7e-42,
Organism=Drosophila melanogaster, GI28573514, Length=204, Percent_Identity=40.6862745098039, Blast_Score=167, Evalue=7e-42,
Organism=Drosophila melanogaster, GI28573512, Length=204, Percent_Identity=40.6862745098039, Blast_Score=167, Evalue=7e-42,
Organism=Drosophila melanogaster, GI45550449, Length=204, Percent_Identity=40.6862745098039, Blast_Score=166, Evalue=7e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URK_BACA2 (A7Z727)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001422034.1
- ProteinModelPortal:   A7Z727
- STRING:   A7Z727
- EnsemblBacteria:   EBBACT00000006586
- GeneID:   5462358
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_024430
- eggNOG:   COG0572
- GeneTree:   EBGT00050000002133
- HOGENOM:   HBG527126
- OMA:   NQFVEPT
- ProtClustDB:   PRK05480
- BioCyc:   BAMY326423:RBAM_024430-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00551
- InterPro:   IPR006083
- InterPro:   IPR000764
- PANTHER:   PTHR10285:SF6
- PRINTS:   PR00988
- TIGRFAMs:   TIGR00235

Pfam domain/function: PF00485 PRK

EC number: =2.7.1.48

Molecular weight: Translated: 24467; Mature: 24335

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKSPVVIGIAGGSGSGKTSVTRSIYEQFKGHSILMIQQDLYYKDQSHLPFEERLNTNYD
CCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHCCCCCC
HPLAFDNDYLIEHIQELLNYRPIEKPIYDYKLHTRSEETIPVEPKDVIILEGILVLEDKR
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECEEEECCHH
LRDLMDMKLYVDTDADLRIIRRIMRDINERGRSIDSVIEQYVSVVRPMHNQFVEPTKRYA
HHHHHHCEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
DIIIPEGGQNHVAIDLMVTKIQTILEQNAIL
EEEECCCCCCCEEEHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GKSPVVIGIAGGSGSGKTSVTRSIYEQFKGHSILMIQQDLYYKDQSHLPFEERLNTNYD
CCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHCCCCCC
HPLAFDNDYLIEHIQELLNYRPIEKPIYDYKLHTRSEETIPVEPKDVIILEGILVLEDKR
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECEEEECCHH
LRDLMDMKLYVDTDADLRIIRRIMRDINERGRSIDSVIEQYVSVVRPMHNQFVEPTKRYA
HHHHHHCEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
DIIIPEGGQNHVAIDLMVTKIQTILEQNAIL
EEEECCCCCCCEEEHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA