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The map label for this gene is sodA [H]

Identifier: 154686764

GI number: 154686764

Start: 2456114

End: 2456719

Strand: Reverse

Name: sodA [H]

Synonym: RBAM_023340

Alternate gene names: 154686764

Gene position: 2456719-2456114 (Counterclockwise)

Preceding gene: 154686765

Following gene: 154686763

Centisome position: 62.69

GC content: 47.69

Gene sequence:

>606_bases
ATGGCTTACAAACTTCCAGAATTGCCTTACGCTTATGATGCTTTAGAACCTCATATCGATAAGGAAACGATGACGATTCA
CCATACGAAGCACCATAACACATACGTGACAAACCTCAACAAAGCGATCGAAGGATCAGCGCTTGCAGAGAAATCTGTAG
ATGAGCTTGTTGCTGATTTGAACGCAGTGCCGGAGGACATCCGCACGGCAGTCCGCAACAATGGCGGCGGACATGCAAAC
CACTCTTTATTCTGGACTCTTTTATCTCCGAACGGCGGAGGCGAACCGACTGGTGAGCTTGCTGAAGAGATCAAAAGCAC
GTTCGGAAGCTTCGATCAATTTAAAGAAAAATTCGCCGCCGCAGCTGCAGGCCGTTTCGGTTCAGGCTGGGCTTGGCTCG
TTGTAAACAACGGCAAACTTGAAATTACAAGCACGCCAAACCAAGATTCACCGCTTTCAGAAGGTAAAACACCTGTTCTC
GGTCTTGATGTTTGGGAGCACGCGTACTACCTGAACTACCAAAACCGCCGTCCTGATTACATTTCAGCTTTCTGGAATGT
TGTGAACTGGGATGAAGTTGCCCGTCTTTACAGCGAAGCAAAATAA

Upstream 100 bases:

>100_bases
GCTTTTTCATTGATTACCACGCTTTCTTTTGTTACATTGAGATTAGAAAAGTTCGCGTTAAGCGGCATTTCAGTACATAT
ATTTAAAGGAGGAAAAAATT

Downstream 100 bases:

>100_bases
TTGAGTTGAATGATCACAAGGTCTCCCGCGGGAGGCCTTGTTTTTTTATTGACTTTGATTCCTTTTACATATCTCAGTTT
GAGTGAGACAAACTAATGTG

Product: hypothetical protein

Products: NA

Alternate protein names: General stress protein 24; GSP24 [H]

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MAYKLPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAIEGSALAEKSVDELVADLNAVPEDIRTAVRNNGGGHAN
HSLFWTLLSPNGGGEPTGELAEEIKSTFGSFDQFKEKFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPVL
GLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSEAK

Sequences:

>Translated_201_residues
MAYKLPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAIEGSALAEKSVDELVADLNAVPEDIRTAVRNNGGGHAN
HSLFWTLLSPNGGGEPTGELAEEIKSTFGSFDQFKEKFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPVL
GLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSEAK
>Mature_200_residues
AYKLPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAIEGSALAEKSVDELVADLNAVPEDIRTAVRNNGGGHANH
SLFWTLLSPNGGGEPTGELAEEIKSTFGSFDQFKEKFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPVLG
LDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSEAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=205, Percent_Identity=54.6341463414634, Blast_Score=219, Evalue=1e-57,
Organism=Homo sapiens, GI67782305, Length=205, Percent_Identity=54.6341463414634, Blast_Score=219, Evalue=1e-57,
Organism=Homo sapiens, GI67782309, Length=203, Percent_Identity=43.3497536945813, Blast_Score=159, Evalue=2e-39,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=57.6923076923077, Blast_Score=243, Evalue=7e-66,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=51.0204081632653, Blast_Score=207, Evalue=5e-55,
Organism=Caenorhabditis elegans, GI17506561, Length=205, Percent_Identity=45.3658536585366, Blast_Score=177, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI17569479, Length=203, Percent_Identity=43.3497536945813, Blast_Score=172, Evalue=8e-44,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=41.3461538461538, Blast_Score=155, Evalue=3e-39,
Organism=Drosophila melanogaster, GI17136812, Length=203, Percent_Identity=46.3054187192118, Blast_Score=180, Evalue=6e-46,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22379; Mature: 22248

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYKLPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAIEGSALAEKSVDELVADL
CCCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCEEEEHHHHHHCCHHHHHHHHHHHHHHH
NAVPEDIRTAVRNNGGGHANHSLFWTLLSPNGGGEPTGELAEEIKSTFGSFDQFKEKFAA
HCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
AAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPVLGLDVWEHAYYLNYQNRRPDY
HHCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCEEEHHHHHHEEEEECCCCCCHH
ISAFWNVVNWDEVARLYSEAK
HHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
AYKLPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAIEGSALAEKSVDELVADL
CCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCEEEEHHHHHHCCHHHHHHHHHHHHHHH
NAVPEDIRTAVRNNGGGHANHSLFWTLLSPNGGGEPTGELAEEIKSTFGSFDQFKEKFAA
HCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
AAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPVLGLDVWEHAYYLNYQNRRPDY
HHCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCEEEHHHHHHEEEEECCCCCCHH
ISAFWNVVNWDEVARLYSEAK
HHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 10568751; 9298659; 10658653 [H]