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The map label for this gene is xseB

Identifier: 154686693

GI number: 154686693

Start: 2400478

End: 2400732

Strand: Reverse

Name: xseB

Synonym: RBAM_022620

Alternate gene names: 154686693

Gene position: 2400732-2400478 (Counterclockwise)

Preceding gene: 154686694

Following gene: 154686692

Centisome position: 61.27

GC content: 43.14

Gene sequence:

>255_bases
ATGACAGAAACCAAAAAAAGTGAAGAGCTGACATTTGAAGAGGCGATGAAAGGCCTTGAAGGCATTGTGGCAAAGCTTGA
AGAAGGAGACGTGCCGCTGGAGCAGGCGATTAATTATTTTCAGGAAGGGATGGCCCTTTCAAAAATGTGCCATGAAAAGC
TTCAGCATGTCGAAAAGCAAATGGACTTTATTTTAAAAGATAACGGCGAACTTGCACCTTTCAGCGTTCAGGAGGAAGAC
GAAGGTGACAAATAA

Upstream 100 bases:

>100_bases
TCAAAAGCGTTGATCAAGTGGAACAAAATGATACGCTTGAAGTAAAGATGACAGACGGCGTTCTGACGTGTGAAGTATTG
CAAAAGAGAGGCGAACGATA

Downstream 100 bases:

>100_bases
ACTGGACGCATTTTTAGCATCGCGCAAACAACTGATTGAACAGCAGCTTTCTTTGTATACAGAACGGCTTGCGATGCCGG
AAACCCTCAAAAAATCTATG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 84; Mature: 83

Protein sequence:

>84_residues
MTETKKSEELTFEEAMKGLEGIVAKLEEGDVPLEQAINYFQEGMALSKMCHEKLQHVEKQMDFILKDNGELAPFSVQEED
EGDK

Sequences:

>Translated_84_residues
MTETKKSEELTFEEAMKGLEGIVAKLEEGDVPLEQAINYFQEGMALSKMCHEKLQHVEKQMDFILKDNGELAPFSVQEED
EGDK
>Mature_83_residues
TETKKSEELTFEEAMKGLEGIVAKLEEGDVPLEQAINYFQEGMALSKMCHEKLQHVEKQMDFILKDNGELAPFSVQEEDE
GDK

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=71, Percent_Identity=42.2535211267606, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_BACA2 (A7Z6J7)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001421854.1
- ProteinModelPortal:   A7Z6J7
- SMR:   A7Z6J7
- STRING:   A7Z6J7
- EnsemblBacteria:   EBBACT00000007650
- GeneID:   5459558
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_022620
- eggNOG:   COG1722
- GeneTree:   EBGT00050000002908
- HOGENOM:   HBG728416
- OMA:   CHEKLQH
- ProtClustDB:   PRK14063
- BioCyc:   BAMY326423:RBAM_022620-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9565; Mature: 9434

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETKKSEELTFEEAMKGLEGIVAKLEEGDVPLEQAINYFQEGMALSKMCHEKLQHVEKQ
CCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MDFILKDNGELAPFSVQEEDEGDK
HHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TETKKSEELTFEEAMKGLEGIVAKLEEGDVPLEQAINYFQEGMALSKMCHEKLQHVEKQ
CCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MDFILKDNGELAPFSVQEEDEGDK
HHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA