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The map label for this gene is yqiD [H]

Identifier: 154686692

GI number: 154686692

Start: 2399598

End: 2400488

Strand: Reverse

Name: yqiD [H]

Synonym: RBAM_022610

Alternate gene names: 154686692

Gene position: 2400488-2399598 (Counterclockwise)

Preceding gene: 154686693

Following gene: 154686691

Centisome position: 61.26

GC content: 50.73

Gene sequence:

>891_bases
GTGACAAATAAACTGGACGCATTTTTAGCATCGCGCAAACAACTGATTGAACAGCAGCTTTCTTTGTATACAGAACGGCT
TGCGATGCCGGAAACCCTCAAAAAATCTATGCTGTATTCTTTGGAAGCGGGCGGAAAGAGGCTGCGCCCCCTCGTCGTCT
TAGCCGTTCTGAATGCTTACGGAAAAGATGAAAAAGACGGGATTCCGGTCGGGTGCGCTGTCGAAATGATTCATACGTAT
TCTTTAATCCATGATGATCTGCCTTGCATGGACGATGATGATCTGCGCCGGGGAAAGCCCACAAACCATAAAGTCTTCGG
AGAAGCGGCAGCCGTATTGGCCGGAGACGGGCTTCTGACAGAAAGCTTTAAATTGATCACATCTCATGTGTCTGAGGCGG
TTTCAGCAGAAAAACGGCTCCGTCTCGTCGATGAGCTGATCAGCGCGGCGGGAACGGAAGGAATGGTCGGCGGACAGGCT
GCCGACATGGAAGCGGAACAAAAGCGGATAACGCTTGAGGAGCTGGAATCCATCCACGAGCGGAAAACGGCCAAGCTCCT
CGGTTTTTCCGTGACGGCGGGCGCCATTTTGGCAGATGCGCCGGAGGATGAAGTCGAAAAGCTCCGTTTGTTCAGCAGCC
ATATCGGCATCGGATTTCAAATCAGAGACGACATCCTTGATATTGAAGGGCATGAGGAGAAGATCGGCAAACCGGTCGGC
TCAGACTCGTCGAATGAAAAATCAACGTATCCGTCGCTTTTAACGCTTGAAGGCGCGAAAGAAAAGCTTGCGTATCATAT
CAGCGAGGCGAAACAGATCATCAGCGGCCTTTCTCTTCAGAAAGAACTGCTGCATGACCTCTGTGATTTAATCGCGGCGA
GAGATCATTAA

Upstream 100 bases:

>100_bases
ATGTGCCATGAAAAGCTTCAGCATGTCGAAAAGCAAATGGACTTTATTTTAAAAGATAACGGCGAACTTGCACCTTTCAG
CGTTCAGGAGGAAGACGAAG

Downstream 100 bases:

>100_bases
AAACGGTCCTGATTTGAAGGGGCTGCCGCTCCTATGGTAAAATGTAAGCAGTTTCGATGAAAATACAAAGGGAGTCTTTT
TCTTTTTTCAAAAAGACACT

Product: YqiD

Products: NA

Alternate protein names: FPP synthase; (2E,6E)-farnesyl diphosphate synthase; Geranyltranstransferase [H]

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTNKLDAFLASRKQLIEQQLSLYTERLAMPETLKKSMLYSLEAGGKRLRPLVVLAVLNAYGKDEKDGIPVGCAVEMIHTY
SLIHDDLPCMDDDDLRRGKPTNHKVFGEAAAVLAGDGLLTESFKLITSHVSEAVSAEKRLRLVDELISAAGTEGMVGGQA
ADMEAEQKRITLEELESIHERKTAKLLGFSVTAGAILADAPEDEVEKLRLFSSHIGIGFQIRDDILDIEGHEEKIGKPVG
SDSSNEKSTYPSLLTLEGAKEKLAYHISEAKQIISGLSLQKELLHDLCDLIAARDH

Sequences:

>Translated_296_residues
MTNKLDAFLASRKQLIEQQLSLYTERLAMPETLKKSMLYSLEAGGKRLRPLVVLAVLNAYGKDEKDGIPVGCAVEMIHTY
SLIHDDLPCMDDDDLRRGKPTNHKVFGEAAAVLAGDGLLTESFKLITSHVSEAVSAEKRLRLVDELISAAGTEGMVGGQA
ADMEAEQKRITLEELESIHERKTAKLLGFSVTAGAILADAPEDEVEKLRLFSSHIGIGFQIRDDILDIEGHEEKIGKPVG
SDSSNEKSTYPSLLTLEGAKEKLAYHISEAKQIISGLSLQKELLHDLCDLIAARDH
>Mature_295_residues
TNKLDAFLASRKQLIEQQLSLYTERLAMPETLKKSMLYSLEAGGKRLRPLVVLAVLNAYGKDEKDGIPVGCAVEMIHTYS
LIHDDLPCMDDDDLRRGKPTNHKVFGEAAAVLAGDGLLTESFKLITSHVSEAVSAEKRLRLVDELISAAGTEGMVGGQAA
DMEAEQKRITLEELESIHERKTAKLLGFSVTAGAILADAPEDEVEKLRLFSSHIGIGFQIRDDILDIEGHEEKIGKPVGS
DSSNEKSTYPSLLTLEGAKEKLAYHISEAKQIISGLSLQKELLHDLCDLIAARDH

Specific function: Unknown

COG id: COG0142

COG function: function code H; Geranylgeranyl pyrophosphate synthase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FPP/GGPP synthase family [H]

Homologues:

Organism=Homo sapiens, GI50659086, Length=240, Percent_Identity=31.6666666666667, Blast_Score=86, Evalue=5e-17,
Organism=Escherichia coli, GI1786623, Length=284, Percent_Identity=43.3098591549296, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1789578, Length=215, Percent_Identity=33.4883720930233, Blast_Score=116, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17505681, Length=283, Percent_Identity=29.3286219081272, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24651612, Length=231, Percent_Identity=29.004329004329, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000092
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00348 polyprenyl_synt [H]

EC number: =2.5.1.10 [H]

Molecular weight: Translated: 32402; Mature: 32271

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00723 POLYPRENYL_SYNTHET_1 ; PS00444 POLYPRENYL_SYNTHET_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKLDAFLASRKQLIEQQLSLYTERLAMPETLKKSMLYSLEAGGKRLRPLVVLAVLNAY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GKDEKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFGEAAAVLAGDGLLT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCHHH
ESFKLITSHVSEAVSAEKRLRLVDELISAAGTEGMVGGQAADMEAEQKRITLEELESIHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHH
RKTAKLLGFSVTAGAILADAPEDEVEKLRLFSSHIGIGFQIRDDILDIEGHEEKIGKPVG
HHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCC
SDSSNEKSTYPSLLTLEGAKEKLAYHISEAKQIISGLSLQKELLHDLCDLIAARDH
CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TNKLDAFLASRKQLIEQQLSLYTERLAMPETLKKSMLYSLEAGGKRLRPLVVLAVLNAY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GKDEKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFGEAAAVLAGDGLLT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCHHH
ESFKLITSHVSEAVSAEKRLRLVDELISAAGTEGMVGGQAADMEAEQKRITLEELESIHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHH
RKTAKLLGFSVTAGAILADAPEDEVEKLRLFSSHIGIGFQIRDDILDIEGHEEKIGKPVG
HHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCC
SDSSNEKSTYPSLLTLEGAKEKLAYHISEAKQIISGLSLQKELLHDLCDLIAARDH
CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]