Click here to switch to the map view.

The map label for this gene is ypbB [H]

Identifier: 154686549

GI number: 154686549

Start: 2213770

End: 2214828

Strand: Reverse

Name: ypbB [H]

Synonym: RBAM_021180

Alternate gene names: 154686549

Gene position: 2214828-2213770 (Counterclockwise)

Preceding gene: 154686551

Following gene: 154686548

Centisome position: 56.52

GC content: 47.4

Gene sequence:

>1059_bases
TTGGCGATAAACTACTTTGATACCGTGGTTCTCGACTGTCTGGACAAAATAGACGGCGAACGGACTCCGAGTGCTGTGTT
TCATTTATTAAAAGGAAAAAAGTCGTCTCAAACCATTCAGGATGCCGGCTTATTTCAGATCGCTAAATATTTCGGCATGG
CTTCACATTGTGAACGCGGCGATATTGCGGCTTCTTTGCATAAACTCACCGAGAACTCATACATTACAGCCGGAAAAGAA
GAGGGAACGTGGAAAGTGACTGCGCGCGGCGTTCAAAAGCTTGAACGGGCGTTTGCCGAGCGGCCTTGGCCGAAGCACTG
CCACGGCGCGAATTATCAAACGCCTGCCGTCACCCTGTGGAGGCGGCTTTCCCTGCTCATTCAAGTCCTGTCAAACAAAG
AGCATCAATGCAGTCAATATATCCCGGTTACAAACGATGTGCAGACGCTGAGATGGGTCAAACGGTTCATGCGCAAAAAC
AGAGACGCTAAAGAGCTCTCCGTCCAAATGCATGAGACGCTGTTTCACCTTCTGCAAGGCGTAAGTGAACGGCAGGCGCT
TATTTTTGTCTATTCTTTAACTTCATTCAACAGAATCGGCAAAACGAATAAGCAGCTTGCTCTCCAGCTGAACGAAGATG
AATGGTATGTGTCCGTCCAGTTTTGGGGAGCGGTACATTATGTTATTCAATCGCTTCCGCAATGTGCATATCCCGCTCTG
CGCGAGCTGTTGTCCGATCTGCAGGCGGAAAGCGCGCTGACACAGTCTGCCAGAAAAACCTTAGAGCTGTTGGAAAAAGG
GTTTCCGATTGAACGGATCGCCGCGGTCAGAAATTTAAAAACCGCCACAATCGAAGATCATATCGTAGAAATATCATTGC
ATCAGCCTGCATTTTTTATAGAACAGTATCTTTCTGAAGAGGAACAGCGTATGATAACGGCATTTGCAAAACAGCATCAA
ACGAATAAAATTAAACAGATTCGCGAAGGAATGCAGATGCGCTTCAGCTATTTCCAGATCAGGCTGGCGCTGGCAAAGAC
GGTGAATCAGCATGACTGA

Upstream 100 bases:

>100_bases
TAAAAGATGACTTTAAACGTCAAATTTATATGAAAATCTGTTAAAATAAAAAGAACCAAAAAACGAAACTTGTCACAGAA
GAAATGTAGGTGTGTTTAGA

Downstream 100 bases:

>100_bases
GCTGCATAAAGCTTTATCCAAGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAGCGTGCTCC
AAAAAAAGGATACGATCGCC

Product: YpbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MAINYFDTVVLDCLDKIDGERTPSAVFHLLKGKKSSQTIQDAGLFQIAKYFGMASHCERGDIAASLHKLTENSYITAGKE
EGTWKVTARGVQKLERAFAERPWPKHCHGANYQTPAVTLWRRLSLLIQVLSNKEHQCSQYIPVTNDVQTLRWVKRFMRKN
RDAKELSVQMHETLFHLLQGVSERQALIFVYSLTSFNRIGKTNKQLALQLNEDEWYVSVQFWGAVHYVIQSLPQCAYPAL
RELLSDLQAESALTQSARKTLELLEKGFPIERIAAVRNLKTATIEDHIVEISLHQPAFFIEQYLSEEEQRMITAFAKQHQ
TNKIKQIREGMQMRFSYFQIRLALAKTVNQHD

Sequences:

>Translated_352_residues
MAINYFDTVVLDCLDKIDGERTPSAVFHLLKGKKSSQTIQDAGLFQIAKYFGMASHCERGDIAASLHKLTENSYITAGKE
EGTWKVTARGVQKLERAFAERPWPKHCHGANYQTPAVTLWRRLSLLIQVLSNKEHQCSQYIPVTNDVQTLRWVKRFMRKN
RDAKELSVQMHETLFHLLQGVSERQALIFVYSLTSFNRIGKTNKQLALQLNEDEWYVSVQFWGAVHYVIQSLPQCAYPAL
RELLSDLQAESALTQSARKTLELLEKGFPIERIAAVRNLKTATIEDHIVEISLHQPAFFIEQYLSEEEQRMITAFAKQHQ
TNKIKQIREGMQMRFSYFQIRLALAKTVNQHD
>Mature_351_residues
AINYFDTVVLDCLDKIDGERTPSAVFHLLKGKKSSQTIQDAGLFQIAKYFGMASHCERGDIAASLHKLTENSYITAGKEE
GTWKVTARGVQKLERAFAERPWPKHCHGANYQTPAVTLWRRLSLLIQVLSNKEHQCSQYIPVTNDVQTLRWVKRFMRKNR
DAKELSVQMHETLFHLLQGVSERQALIFVYSLTSFNRIGKTNKQLALQLNEDEWYVSVQFWGAVHYVIQSLPQCAYPALR
ELLSDLQAESALTQSARKTLELLEKGFPIERIAAVRNLKTATIEDHIVEISLHQPAFFIEQYLSEEEQRMITAFAKQHQT
NKIKQIREGMQMRFSYFQIRLALAKTVNQHD

Specific function: Unknown

COG id: COG4955

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008308 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40599; Mature: 40468

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINYFDTVVLDCLDKIDGERTPSAVFHLLKGKKSSQTIQDAGLFQIAKYFGMASHCERG
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHCCCCC
DIAASLHKLTENSYITAGKEEGTWKVTARGVQKLERAFAERPWPKHCHGANYQTPAVTLW
HHHHHHHHHHCCCCEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
RRLSLLIQVLSNKEHQCSQYIPVTNDVQTLRWVKRFMRKNRDAKELSVQMHETLFHLLQG
HHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
VSERQALIFVYSLTSFNRIGKTNKQLALQLNEDEWYVSVQFWGAVHYVIQSLPQCAYPAL
CCCCCCEEEEEEHHHHHHCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHCCHHHHHHH
RELLSDLQAESALTQSARKTLELLEKGFPIERIAAVRNLKTATIEDHIVEISLHQPAFFI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHEEEEEECCCHHHH
EQYLSEEEQRMITAFAKQHQTNKIKQIREGMQMRFSYFQIRLALAKTVNQHD
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AINYFDTVVLDCLDKIDGERTPSAVFHLLKGKKSSQTIQDAGLFQIAKYFGMASHCERG
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHCCCCC
DIAASLHKLTENSYITAGKEEGTWKVTARGVQKLERAFAERPWPKHCHGANYQTPAVTLW
HHHHHHHHHHCCCCEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
RRLSLLIQVLSNKEHQCSQYIPVTNDVQTLRWVKRFMRKNRDAKELSVQMHETLFHLLQG
HHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
VSERQALIFVYSLTSFNRIGKTNKQLALQLNEDEWYVSVQFWGAVHYVIQSLPQCAYPAL
CCCCCCEEEEEEHHHHHHCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHCCHHHHHHH
RELLSDLQAESALTQSARKTLELLEKGFPIERIAAVRNLKTATIEDHIVEISLHQPAFFI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHEEEEEECCCHHHH
EQYLSEEEQRMITAFAKQHQTNKIKQIREGMQMRFSYFQIRLALAKTVNQHD
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]