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The map label for this gene is ypbD [H]

Identifier: 154686547

GI number: 154686547

Start: 2211685

End: 2212239

Strand: Reverse

Name: ypbD [H]

Synonym: RBAM_021160

Alternate gene names: 154686547

Gene position: 2212239-2211685 (Counterclockwise)

Preceding gene: 154686548

Following gene: 154686546

Centisome position: 56.45

GC content: 43.24

Gene sequence:

>555_bases
ATGCAGCTGTACGCCACCCAATTGCTCATATTGGCGGTTTCAGCTGTTATCGGCTTTTTCTTTTTTACCGACATTCACGA
TTTTTTAAAACTGTGGCATATACGTGACGATAATATCATATGGTACGGTGTAACTCTTGCCGTCCTTGTCATTTTTGCCG
ATCTGGCGGTGATGAAATGGTGTCCTTCGCATTTATATGATGACGGCGGCATTAATGTATTGCTTTTTAAGAACAGGCCG
GTTCTGCACATTTTGTTTTTGACGCTTCTCATTTCGTTCAGCGAAGAGATTTTGTTCAGAGGCGTTCTGCAAACACATAT
CGGCTTATGGGCCGCCAGCTTCATTTTTACCGTGCTTCATTTCAGATACTTGGCGAAGTGGCTTCTGTTTATGATGGTTG
CGGGCATCAGTCTTTTGCTGGGGCTTATCTATGAATGGACCGGCAATTTATTCGTTCCGGTTACAGCGCATTTTATTATT
GATGCGGTATTTGCCTGTCAGATCCGTTTTCAATATGTTAGGAGGGGTTTGCATGACGGAAATGTCAAGAGTTGA

Upstream 100 bases:

>100_bases
AGCTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGAGACGGCAAAGCGAATTGATCCGGCAGC
TCTCAGACCGGGAGATTGTG

Downstream 100 bases:

>100_bases
AAGAAGAAAAGCTCAGCTGCGTGCCGAGCAGCAGGTTGCCGCGGCCGCGGATGAACAAATTGAATATCTTGAAGACAGCC
TCCCGACAAGACAATCTGTA

Product: YpbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MQLYATQLLILAVSAVIGFFFFTDIHDFLKLWHIRDDNIIWYGVTLAVLVIFADLAVMKWCPSHLYDDGGINVLLFKNRP
VLHILFLTLLISFSEEILFRGVLQTHIGLWAASFIFTVLHFRYLAKWLLFMMVAGISLLLGLIYEWTGNLFVPVTAHFII
DAVFACQIRFQYVRRGLHDGNVKS

Sequences:

>Translated_184_residues
MQLYATQLLILAVSAVIGFFFFTDIHDFLKLWHIRDDNIIWYGVTLAVLVIFADLAVMKWCPSHLYDDGGINVLLFKNRP
VLHILFLTLLISFSEEILFRGVLQTHIGLWAASFIFTVLHFRYLAKWLLFMMVAGISLLLGLIYEWTGNLFVPVTAHFII
DAVFACQIRFQYVRRGLHDGNVKS
>Mature_184_residues
MQLYATQLLILAVSAVIGFFFFTDIHDFLKLWHIRDDNIIWYGVTLAVLVIFADLAVMKWCPSHLYDDGGINVLLFKNRP
VLHILFLTLLISFSEEILFRGVLQTHIGLWAASFIFTVLHFRYLAKWLLFMMVAGISLLLGLIYEWTGNLFVPVTAHFII
DAVFACQIRFQYVRRGLHDGNVKS

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003675 [H]

Pfam domain/function: PF02517 Abi [H]

EC number: NA

Molecular weight: Translated: 21240; Mature: 21240

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLYATQLLILAVSAVIGFFFFTDIHDFLKLWHIRDDNIIWYGVTLAVLVIFADLAVMKW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH
CPSHLYDDGGINVLLFKNRPVLHILFLTLLISFSEEILFRGVLQTHIGLWAASFIFTVLH
HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRYLAKWLLFMMVAGISLLLGLIYEWTGNLFVPVTAHFIIDAVFACQIRFQYVRRGLHDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NVKS
CCCC
>Mature Secondary Structure
MQLYATQLLILAVSAVIGFFFFTDIHDFLKLWHIRDDNIIWYGVTLAVLVIFADLAVMKW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH
CPSHLYDDGGINVLLFKNRPVLHILFLTLLISFSEEILFRGVLQTHIGLWAASFIFTVLH
HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRYLAKWLLFMMVAGISLLLGLIYEWTGNLFVPVTAHFIIDAVFACQIRFQYVRRGLHDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NVKS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]