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The map label for this gene is yrdC [H]

Identifier: 154686456

GI number: 154686456

Start: 2126640

End: 2127206

Strand: Reverse

Name: yrdC [H]

Synonym: RBAM_020240

Alternate gene names: 154686456

Gene position: 2127206-2126640 (Counterclockwise)

Preceding gene: 154686457

Following gene: 154686454

Centisome position: 54.28

GC content: 34.39

Gene sequence:

>567_bases
ATGGCAGAAAAGAAAAAAGCTTTAATCATTGTGGATGTACAAAAAGCCTTTGATGATAAAAAGTGGGGAGAACGAAATAA
CGTAAAGGCGGAAGAAAATATCAGCAAAATACTGAAATTATGGAGAGAAAAAGGATGGACAGTCATATACATACAACATA
CTTCTGATAAACCTGGTTCTTTATTTTATCCAAAAAATGAGGGGGTTGCTATAAAGGAAATCGTTAAACCTATGGAAAAA
GAAGTCATTATAACCAAAAAAGTAAACAGCAGCTTTATTGGGACTAATCTAGAAGAGCTTTTAAAAGCAAATGATATAAC
AACTGTCGTAATCACTGGCTTGACTACGCCGCACTGTGTTTCAACAACCACAAGGATGAGCGGTAATTTAGGATTTGATA
CATATCTGATTTCAGATGCAACAGCAGCCTTCGGAATGAGAGACCAAAATGATACATATTATGATGCAGAGACTATTCAC
AATATATCTCTGGCTACGTTGCATGATGAATTTGCCACAATATTAACGACTGATCAATTAATCAACGATTTTATAAAAAC
AAACTGA

Upstream 100 bases:

>100_bases
GAAGGTGCGATATGAAATTTAACACTGAAACAATTGTACAAAAGTAAAATCTTTATTTAAAATGTTATAAATACGAATTT
TCAATATAGGAGGTTATCTG

Downstream 100 bases:

>100_bases
TTAACATTATGGCTAAGGCCGGCGATGGGTATAGGCGGCTGAAAAGCATATTCAGGCGCATACAAGGGCCTCGTCGGAAA
ATACGGGGTTGCCGACTCTT

Product: YrdC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MAEKKKALIIVDVQKAFDDKKWGERNNVKAEENISKILKLWREKGWTVIYIQHTSDKPGSLFYPKNEGVAIKEIVKPMEK
EVIITKKVNSSFIGTNLEELLKANDITTVVITGLTTPHCVSTTTRMSGNLGFDTYLISDATAAFGMRDQNDTYYDAETIH
NISLATLHDEFATILTTDQLINDFIKTN

Sequences:

>Translated_188_residues
MAEKKKALIIVDVQKAFDDKKWGERNNVKAEENISKILKLWREKGWTVIYIQHTSDKPGSLFYPKNEGVAIKEIVKPMEK
EVIITKKVNSSFIGTNLEELLKANDITTVVITGLTTPHCVSTTTRMSGNLGFDTYLISDATAAFGMRDQNDTYYDAETIH
NISLATLHDEFATILTTDQLINDFIKTN
>Mature_187_residues
AEKKKALIIVDVQKAFDDKKWGERNNVKAEENISKILKLWREKGWTVIYIQHTSDKPGSLFYPKNEGVAIKEIVKPMEKE
VIITKKVNSSFIGTNLEELLKANDITTVVITGLTTPHCVSTTTRMSGNLGFDTYLISDATAAFGMRDQNDTYYDAETIHN
ISLATLHDEFATILTTDQLINDFIKTN

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 21202; Mature: 21071

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKKKALIIVDVQKAFDDKKWGERNNVKAEENISKILKLWREKGWTVIYIQHTSDKPGS
CCCCCCEEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
LFYPKNEGVAIKEIVKPMEKEVIITKKVNSSFIGTNLEELLKANDITTVVITGLTTPHCV
EECCCCCCEEHHHHHCHHHHCEEEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCC
STTTRMSGNLGFDTYLISDATAAFGMRDQNDTYYDAETIHNISLATLHDEFATILTTDQL
CCHHCCCCCCCCEEEEECCCHHHCCCCCCCCCEECHHHHCCEEEEEHHHHHHHHHHHHHH
INDFIKTN
HHHHHHCC
>Mature Secondary Structure 
AEKKKALIIVDVQKAFDDKKWGERNNVKAEENISKILKLWREKGWTVIYIQHTSDKPGS
CCCCCEEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
LFYPKNEGVAIKEIVKPMEKEVIITKKVNSSFIGTNLEELLKANDITTVVITGLTTPHCV
EECCCCCCEEHHHHHCHHHHCEEEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCC
STTTRMSGNLGFDTYLISDATAAFGMRDQNDTYYDAETIHNISLATLHDEFATILTTDQL
CCHHCCCCCCCCEEEEECCCHHHCCCCCCCCCEECHHHHCCEEEEEHHHHHHHHHHHHHH
INDFIKTN
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 9287000 [H]