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The map label for this gene is ypmQ [H]

Identifier: 154686422

GI number: 154686422

Start: 2098145

End: 2098768

Strand: Reverse

Name: ypmQ [H]

Synonym: RBAM_019900

Alternate gene names: 154686422

Gene position: 2098768-2098145 (Counterclockwise)

Preceding gene: 154686423

Following gene: 154686421

Centisome position: 53.56

GC content: 46.31

Gene sequence:

>624_bases
ATGATGAATGCTGTAAGCGTTTTATCCATGGGGGGAATGGAAATGAAAAAAATGAAAATCTTCGCTGCCGTCTTTTGTTT
GCTGCTCTTGTGCGCCTGCGGGGGGAAAACGATAAAAGACCCGCTGAACTATCAGATTGAACCGTTTTCATACCAGAACC
AAGACGGGAAAACAGTGTCACTGAATAGCCTGAAGGGGCATGTCTGGATTGCCGACTTTATGTTTACAAATTGTAATACG
GTCTGTCCGCCGATGACGGCCCACATGACCGAACTGCAAAAAAAACTGAAGGCTGAGAATCTGGACGTGCGGATTGTGTC
GTTCAGTGTAGATCCTGAAAAGGATACGCCGAAACAGCTGAAAGCATTTGCTGCCAAATACCCGCTCTCACTTCGCAACT
GGGATTTTCTGACCGGTTACAGCCAAAAGGACATTGAAGATTTTGCGCTGAACAGCTTTAAAGCAATCGTCAAAAAGCCG
GAGGGAGAGGACCAGGTCATACATCAAACCTCTTTTTATTTAGTCGGACCTGATGGCAAGGTGCTTAAAGATTATGACGG
CGTGCAGAAAGTTCCGTATGATGACATCCTCTCAGATGTCAGAGCGGCTGAGGAGCTCAAGTAA

Upstream 100 bases:

>100_bases
ACGAGGCCGTTTTCAACCAAGAGATTTTAAAACATAACGCATAACGGTGCATATTCCTTAGCGCCTTCCTTTTGATAAGG
GAGGGTGCGGGAATTTTTTT

Downstream 100 bases:

>100_bases
ACTGGCAGATTAGACATTTTCAAATCTGAAAAAACATGTTACACTTTCCACTAGTAGAAGGGGAAGGAGCAACCAGATTG
AAGCTGCGAATGTTCTCATT

Product: YpmQ

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MMNAVSVLSMGGMEMKKMKIFAAVFCLLLLCACGGKTIKDPLNYQIEPFSYQNQDGKTVSLNSLKGHVWIADFMFTNCNT
VCPPMTAHMTELQKKLKAENLDVRIVSFSVDPEKDTPKQLKAFAAKYPLSLRNWDFLTGYSQKDIEDFALNSFKAIVKKP
EGEDQVIHQTSFYLVGPDGKVLKDYDGVQKVPYDDILSDVRAAEELK

Sequences:

>Translated_207_residues
MMNAVSVLSMGGMEMKKMKIFAAVFCLLLLCACGGKTIKDPLNYQIEPFSYQNQDGKTVSLNSLKGHVWIADFMFTNCNT
VCPPMTAHMTELQKKLKAENLDVRIVSFSVDPEKDTPKQLKAFAAKYPLSLRNWDFLTGYSQKDIEDFALNSFKAIVKKP
EGEDQVIHQTSFYLVGPDGKVLKDYDGVQKVPYDDILSDVRAAEELK
>Mature_207_residues
MMNAVSVLSMGGMEMKKMKIFAAVFCLLLLCACGGKTIKDPLNYQIEPFSYQNQDGKTVSLNSLKGHVWIADFMFTNCNT
VCPPMTAHMTELQKKLKAENLDVRIVSFSVDPEKDTPKQLKAFAAKYPLSLRNWDFLTGYSQKDIEDFALNSFKAIVKKP
EGEDQVIHQTSFYLVGPDGKVLKDYDGVQKVPYDDILSDVRAAEELK

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23277; Mature: 23277

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNAVSVLSMGGMEMKKMKIFAAVFCLLLLCACGGKTIKDPLNYQIEPFSYQNQDGKTVS
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCEEE
LNSLKGHVWIADFMFTNCNTVCPPMTAHMTELQKKLKAENLDVRIVSFSVDPEKDTPKQL
ECCCCCEEEEEEEHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHH
KAFAAKYPLSLRNWDFLTGYSQKDIEDFALNSFKAIVKKPEGEDQVIHQTSFYLVGPDGK
HHHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCC
VLKDYDGVQKVPYDDILSDVRAAEELK
EECCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMNAVSVLSMGGMEMKKMKIFAAVFCLLLLCACGGKTIKDPLNYQIEPFSYQNQDGKTVS
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCEEE
LNSLKGHVWIADFMFTNCNTVCPPMTAHMTELQKKLKAENLDVRIVSFSVDPEKDTPKQL
ECCCCCEEEEEEEHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHH
KAFAAKYPLSLRNWDFLTGYSQKDIEDFALNSFKAIVKKPEGEDQVIHQTSFYLVGPDGK
HHHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCC
VLKDYDGVQKVPYDDILSDVRAAEELK
EECCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]