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The map label for this gene is ypmR [H]

Identifier: 154686421

GI number: 154686421

Start: 2097312

End: 2098067

Strand: Reverse

Name: ypmR [H]

Synonym: RBAM_019890

Alternate gene names: 154686421

Gene position: 2098067-2097312 (Counterclockwise)

Preceding gene: 154686422

Following gene: 154686420

Centisome position: 53.54

GC content: 44.58

Gene sequence:

>756_bases
TTGAAGCTGCGAATGTTCTCATTGATCGCCGGACTGGCTTTGCTTTTATCAGCTTGTTCTGTCCAGCGCACCGGTTCTGA
CGCTGAAGAACCGAAAACGAAAGATCATATTGTCATAGCTGCGGTCGGTGATTCATTGACTGAAGGAGTAGGAGATCCTG
ACGGTTCAGGATACGTCGGCAGGGCAGCGGAGTCTCTTAAGAAAAAGGGACATGTGAAAACGGTAGATATTAAAAATTAT
GCGGTGCAGGGTGACAAAACGTCGGACCTGCTGGAAAAGCTTGATAATAAAAAAGTTCAGAAATCATTAAAGAGCGCCGA
CTATATCTTTTTTACCATCGGCGGTAATGACTTAATGAAGGTGCTCCGCCAGAATATGATGCAGCTGACGGTTCAGCCGT
TCCAAAAGGAAGAGAAACCTTTTGAAAAACGATTCAAGGCGATCGTTTCAAAAATCCGCAAATATAATGAAAACGCAGAG
CTGGTGTATGTCAGCATGTATAATCCATTCACGTTTACGCTGCCTGAATTAAAAGAAATTAATGGGGTTGTGACGGATTG
GAACAAGATCGCCGCAAAAGAGCTGGAAAAAGATCCCCACGCCGCTGCGGTGAATGTTGAAGACTTGTTCAGTCAAAAAA
GCGGCAGCAGACGGATTTCAAAGGATGATGATTTTCATCCGAACGCAAAAGGGTATGCACTCATCGCCGATCGATTGTAC
GGCATCATTGAAAAACAAGGGTTACCAGCAGAATAG

Upstream 100 bases:

>100_bases
GAGCGGCTGAGGAGCTCAAGTAAACTGGCAGATTAGACATTTTCAAATCTGAAAAAACATGTTACACTTTCCACTAGTAG
AAGGGGAAGGAGCAACCAGA

Downstream 100 bases:

>100_bases
GGTGAAATGATGAAAAAGTGGAAATCGCTGTTTTTTGTTCTTCTCGCACTCAATGTGATTGCCGCCGCGGTAATTGTGAC
ATTATTGGTTATGCCGGGAG

Product: YpmR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKLRMFSLIAGLALLLSACSVQRTGSDAEEPKTKDHIVIAAVGDSLTEGVGDPDGSGYVGRAAESLKKKGHVKTVDIKNY
AVQGDKTSDLLEKLDNKKVQKSLKSADYIFFTIGGNDLMKVLRQNMMQLTVQPFQKEEKPFEKRFKAIVSKIRKYNENAE
LVYVSMYNPFTFTLPELKEINGVVTDWNKIAAKELEKDPHAAAVNVEDLFSQKSGSRRISKDDDFHPNAKGYALIADRLY
GIIEKQGLPAE

Sequences:

>Translated_251_residues
MKLRMFSLIAGLALLLSACSVQRTGSDAEEPKTKDHIVIAAVGDSLTEGVGDPDGSGYVGRAAESLKKKGHVKTVDIKNY
AVQGDKTSDLLEKLDNKKVQKSLKSADYIFFTIGGNDLMKVLRQNMMQLTVQPFQKEEKPFEKRFKAIVSKIRKYNENAE
LVYVSMYNPFTFTLPELKEINGVVTDWNKIAAKELEKDPHAAAVNVEDLFSQKSGSRRISKDDDFHPNAKGYALIADRLY
GIIEKQGLPAE
>Mature_251_residues
MKLRMFSLIAGLALLLSACSVQRTGSDAEEPKTKDHIVIAAVGDSLTEGVGDPDGSGYVGRAAESLKKKGHVKTVDIKNY
AVQGDKTSDLLEKLDNKKVQKSLKSADYIFFTIGGNDLMKVLRQNMMQLTVQPFQKEEKPFEKRFKAIVSKIRKYNENAE
LVYVSMYNPFTFTLPELKEINGVVTDWNKIAAKELEKDPHAAAVNVEDLFSQKSGSRRISKDDDFHPNAKGYALIADRLY
GIIEKQGLPAE

Specific function: Unknown

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087 [H]

Pfam domain/function: PF00657 Lipase_GDSL [H]

EC number: NA

Molecular weight: Translated: 27930; Mature: 27930

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRMFSLIAGLALLLSACSVQRTGSDAEEPKTKDHIVIAAVGDSLTEGVGDPDGSGYVG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCHH
RAAESLKKKGHVKTVDIKNYAVQGDKTSDLLEKLDNKKVQKSLKSADYIFFTIGGNDLMK
HHHHHHHHCCCEEEEEECCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
VLRQNMMQLTVQPFQKEEKPFEKRFKAIVSKIRKYNENAELVYVSMYNPFTFTLPELKEI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCHHHHC
NGVVTDWNKIAAKELEKDPHAAAVNVEDLFSQKSGSRRISKDDDFHPNAKGYALIADRLY
CCHHHHHHHHHHHHHCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
GIIEKQGLPAE
HHHHCCCCCCC
>Mature Secondary Structure
MKLRMFSLIAGLALLLSACSVQRTGSDAEEPKTKDHIVIAAVGDSLTEGVGDPDGSGYVG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCHH
RAAESLKKKGHVKTVDIKNYAVQGDKTSDLLEKLDNKKVQKSLKSADYIFFTIGGNDLMK
HHHHHHHHCCCEEEEEECCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
VLRQNMMQLTVQPFQKEEKPFEKRFKAIVSKIRKYNENAELVYVSMYNPFTFTLPELKEI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCHHHHC
NGVVTDWNKIAAKELEKDPHAAAVNVEDLFSQKSGSRRISKDDDFHPNAKGYALIADRLY
CCHHHHHHHHHHHHHCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
GIIEKQGLPAE
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 3145906 [H]