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The map label for this gene is yobQ [H]

Identifier: 154686317

GI number: 154686317

Start: 2008723

End: 2009433

Strand: Reverse

Name: yobQ [H]

Synonym: RBAM_018850

Alternate gene names: 154686317

Gene position: 2009433-2008723 (Counterclockwise)

Preceding gene: 154686318

Following gene: 154686316

Centisome position: 51.28

GC content: 42.33

Gene sequence:

>711_bases
ATGGATTCATTACAACATATCATTTGTGAGCGGCGCACCTATTCACATATTTTTGATTCTCATGCACACACATACTGTCA
AATGCTCTTTCCGCTCGAAGGACAGCTGGACCTGGAGACAGAAAGACGTAAAATCAGATTAAAACCTGATCAAATGTTGT
ATATTCCGCCTGGGCATGAACATCGGTTCCGTTCTTTGGAGCGAAATGAATGTCTCGTTCTCGACATACCGGCATATTTT
TTCAAAGGTTCATTTGCCCCCGGCGTTCTGAATAAGCTTGATCCTTTTTGGACATCGATTCGGTTTCTGCTGACAGAAGA
GACAAAGCAGCAATCGGCTCATTCATTGAGTCTGCTTGCAGAATATATTGCTGAAAAGATACAAGAAAACCGTACAAATG
ATTCAATTGCGTATATCCGCCGAAATCTCTCAAAGACTTTTACAATTAAAGAGCTTGCCGCAATGGAACATTACCACCCG
GCGTATTATTCCGACTGGTTTAAAAAGCAGACGGGGAAAAGCCCGCAAGCTTATATTGCTGAGCTCCGTATGAAGAAAGC
GGAACAAATGCTTATTGAAACAAAATGCCGGCTGACAGACATCAGTCAGGAGGTCGGCTTTCAAAATTTGTCTTCCTTTA
CCAGATGGTTTGTCAGACATAAGGGAATAACGCCGCGTGTCTTCCGAAACACCTTTCAATCTGATAAATAA

Upstream 100 bases:

>100_bases
GTTTGCAGTTGTTGCTTTTCTAAGAGGTTTGCAGGAGAGGGAACAATAATATTATTATGTAAACTAAATAAAAAGACGTA
TCATGTAAAAGGAGGGACAA

Downstream 100 bases:

>100_bases
TCCTGAAAATCGGTTAAATAAACTGCTTCTTTTTTTGGTAACATGATTGTAAAAAAGGAGTTTTTGATATGGCAGTCATT
GAAGATTTTATCAAGCTTGA

Product: YobQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MDSLQHIICERRTYSHIFDSHAHTYCQMLFPLEGQLDLETERRKIRLKPDQMLYIPPGHEHRFRSLERNECLVLDIPAYF
FKGSFAPGVLNKLDPFWTSIRFLLTEETKQQSAHSLSLLAEYIAEKIQENRTNDSIAYIRRNLSKTFTIKELAAMEHYHP
AYYSDWFKKQTGKSPQAYIAELRMKKAEQMLIETKCRLTDISQEVGFQNLSSFTRWFVRHKGITPRVFRNTFQSDK

Sequences:

>Translated_236_residues
MDSLQHIICERRTYSHIFDSHAHTYCQMLFPLEGQLDLETERRKIRLKPDQMLYIPPGHEHRFRSLERNECLVLDIPAYF
FKGSFAPGVLNKLDPFWTSIRFLLTEETKQQSAHSLSLLAEYIAEKIQENRTNDSIAYIRRNLSKTFTIKELAAMEHYHP
AYYSDWFKKQTGKSPQAYIAELRMKKAEQMLIETKCRLTDISQEVGFQNLSSFTRWFVRHKGITPRVFRNTFQSDK
>Mature_236_residues
MDSLQHIICERRTYSHIFDSHAHTYCQMLFPLEGQLDLETERRKIRLKPDQMLYIPPGHEHRFRSLERNECLVLDIPAYF
FKGSFAPGVLNKLDPFWTSIRFLLTEETKQQSAHSLSLLAEYIAEKIQENRTNDSIAYIRRNLSKTFTIKELAAMEHYHP
AYYSDWFKKQTGKSPQAYIAELRMKKAEQMLIETKCRLTDISQEVGFQNLSSFTRWFVRHKGITPRVFRNTFQSDK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 27989; Mature: 27989

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLQHIICERRTYSHIFDSHAHTYCQMLFPLEGQLDLETERRKIRLKPDQMLYIPPGHE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEECCCCH
HRFRSLERNECLVLDIPAYFFKGSFAPGVLNKLDPFWTSIRFLLTEETKQQSAHSLSLLA
HHHHHCCCCCEEEEECCHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EYIAEKIQENRTNDSIAYIRRNLSKTFTIKELAAMEHYHPAYYSDWFKKQTGKSPQAYIA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHH
ELRMKKAEQMLIETKCRLTDISQEVGFQNLSSFTRWFVRHKGITPRVFRNTFQSDK
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MDSLQHIICERRTYSHIFDSHAHTYCQMLFPLEGQLDLETERRKIRLKPDQMLYIPPGHE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEECCCCH
HRFRSLERNECLVLDIPAYFFKGSFAPGVLNKLDPFWTSIRFLLTEETKQQSAHSLSLLA
HHHHHCCCCCEEEEECCHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EYIAEKIQENRTNDSIAYIRRNLSKTFTIKELAAMEHYHPAYYSDWFKKQTGKSPQAYIA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHH
ELRMKKAEQMLIETKCRLTDISQEVGFQNLSSFTRWFVRHKGITPRVFRNTFQSDK
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]