Click here to switch to the map view.

The map label for this gene is yobS [H]

Identifier: 154686318

GI number: 154686318

Start: 2009485

End: 2010051

Strand: Reverse

Name: yobS [H]

Synonym: RBAM_018860

Alternate gene names: 154686318

Gene position: 2010051-2009485 (Counterclockwise)

Preceding gene: 154686319

Following gene: 154686317

Centisome position: 51.3

GC content: 46.56

Gene sequence:

>567_bases
ATGTCACCGAGAGTCGGAATGAGCCTTGACATGATATTGAGAGCTGCAGCAGGCATCGCTGACGAAAAAGGGCTGAACGA
AGTGACGCTTGCGGCTGTTGCAAAGTCCTTAAACGTAAAACCGCCTTCCCTTTACAATTTTGTCAATGGCCTTCAAGGAA
TTAAAACAGAGCTGGCTGTCTCCGGTTTAACTATGTTATATGAAAAAATGGCGGCCTCTGCAGAAGGACTGACGGGCGAA
ACGGCTTTGCTTGCTCTCGCCGATGCCTATATCAATTTCGCCGAAGCCAATCCCGGATTATATGACGCAACATTTCAAAA
GATAAAAGATGGCCGGATTGAGAATCTGTCAAGCCTGCTTGTAGAGCTTGTTGTCAGGCAGCTGACAGCTAACGGATATG
CACAGTCTGACACTGCGATTCATGCTGCGAGAGGACTGAGGAGCCTTCTTCACGGATTTGCCGTGTTGAGAAAACAGAGT
GCATTTGAATTAACCGAATCAATTAAGGAAAGCCGGAAGTTTGCAGTTGTTGCTTTTCTAAGAGGTTTGCAGGAGAGGGA
ACAATAA

Upstream 100 bases:

>100_bases
GTCTGGCCGCCGGACATGGAAATGTTCTCTGCAATCCCGTTGAAATGATGGCTGAGGCTGTTGAGGAAGCCGAACGAAGC
CTGCCGGGAGGCCGATCATA

Downstream 100 bases:

>100_bases
TATTATTATGTAAACTAAATAAAAAGACGTATCATGTAAAAGGAGGGACAAATGGATTCATTACAACATATCATTTGTGA
GCGGCGCACCTATTCACATA

Product: YobS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSPRVGMSLDMILRAAAGIADEKGLNEVTLAAVAKSLNVKPPSLYNFVNGLQGIKTELAVSGLTMLYEKMAASAEGLTGE
TALLALADAYINFAEANPGLYDATFQKIKDGRIENLSSLLVELVVRQLTANGYAQSDTAIHAARGLRSLLHGFAVLRKQS
AFELTESIKESRKFAVVAFLRGLQEREQ

Sequences:

>Translated_188_residues
MSPRVGMSLDMILRAAAGIADEKGLNEVTLAAVAKSLNVKPPSLYNFVNGLQGIKTELAVSGLTMLYEKMAASAEGLTGE
TALLALADAYINFAEANPGLYDATFQKIKDGRIENLSSLLVELVVRQLTANGYAQSDTAIHAARGLRSLLHGFAVLRKQS
AFELTESIKESRKFAVVAFLRGLQEREQ
>Mature_187_residues
SPRVGMSLDMILRAAAGIADEKGLNEVTLAAVAKSLNVKPPSLYNFVNGLQGIKTELAVSGLTMLYEKMAASAEGLTGET
ALLALADAYINFAEANPGLYDATFQKIKDGRIENLSSLLVELVVRQLTANGYAQSDTAIHAARGLRSLLHGFAVLRKQSA
FELTESIKESRKFAVVAFLRGLQEREQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20245; Mature: 20113

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRVGMSLDMILRAAAGIADEKGLNEVTLAAVAKSLNVKPPSLYNFVNGLQGIKTELAV
CCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
SGLTMLYEKMAASAEGLTGETALLALADAYINFAEANPGLYDATFQKIKDGRIENLSSLL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
VELVVRQLTANGYAQSDTAIHAARGLRSLLHGFAVLRKQSAFELTESIKESRKFAVVAFL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGLQEREQ
HHHHHHCC
>Mature Secondary Structure 
SPRVGMSLDMILRAAAGIADEKGLNEVTLAAVAKSLNVKPPSLYNFVNGLQGIKTELAV
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
SGLTMLYEKMAASAEGLTGETALLALADAYINFAEANPGLYDATFQKIKDGRIENLSSLL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
VELVVRQLTANGYAQSDTAIHAARGLRSLLHGFAVLRKQSAFELTESIKESRKFAVVAFL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGLQEREQ
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]