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The map label for this gene is ligD [H]

Identifier: 154685751

GI number: 154685751

Start: 1279116

End: 1280951

Strand: Reverse

Name: ligD [H]

Synonym: RBAM_013180

Alternate gene names: 154685751

Gene position: 1280951-1279116 (Counterclockwise)

Preceding gene: 154685752

Following gene: 154685746

Centisome position: 32.69

GC content: 49.02

Gene sequence:

>1836_bases
ATGGTGCTGACGATGCAGCCGATTTTGACCTCTGTACCGCCTGAAGGCAGTGAGTGGCGCTATGAGGTAAAGTATGACGG
ATTCCGCTGTCTTCTCCGCATAGACGAAAGCGGCGTTACATTAACCAGCAGAAACGGACAGACGCTGACGAATCAATTTC
CGGAAATCACGGCTTTTGCGGCCCGGTGTTTTCAGCACATGAAAGACAGGTTCCCCATTACGCTTGACGGAGAGCTTGTC
TATTTAATCAATCCGTACAGAGCGGACTTTGAGCATCTTCAAATCCGCGGACGTTTAAAACGGACGGAAGCAATTGAAAG
CACCGCTGATAGACGGCCGTGCCGCTTTCTGGCATTTGATCTCCTCGTTCTGGAAGGCGCCGGCACCGTCTCATTACCGT
ATGTGAAACGGAAACGCGCCCTTTCCAAACTGCTTAAAGAAGCAAATCTTCCCGCCTGCCCTCATCACTTAGCGGAAGAA
GCGATTCAATACATTCCGGAACACACTGACTTTGATGCGCTTTGGGACAAGGTCGTCCGCCATGACGGAGAAGGTATCGT
AGCAAAAAGGGCTTCCAGCGGCTGGGCGGAAAATAAACGCTCTCCCGACTGGCAAAAGTATAAACATATGAAAACGGCAC
ATGTGCTATTAACCGGGTTTAATCCGAAGAACGGGTATGTAACGGCCTCTGTTTTAAAAGACGGCACCGCCGTCCCGATC
GCTTCCGTTTCCCACGGCATGCAGGCGGAAGAAAAAAACGCCGTCAGAACCATTATGGAGACCCACGGAAAAAAACAAAA
CAGCGGCGAGTATACACTTGAGCCTTCTATCTGCATGACCGTTCAGTATTTAACCATATTGCAGGACACGCTGCGTGAAG
TATCTTTTGTGTCTTTTCAGTTTGAAATGGATTGGACGGAATGCACGTATCAGCAGCTTATCCTTCACTCTAAAACGCTG
CCGCCGAAGCTGCAGTTCACAAGCCTGGATAAGATTGTTTTTAAAAAACGTGAAAAAACGAAAGCAGATTTCCTCAGTTA
TATGGTGAAAATGAGCGATTTTCTTATGCCCTTTCTTAAAGATCGGGCCGTCACGGTGATCCGTTATCCGCACGGCGCGC
CTGGCGAATCTTTTTTTCAAAAAAACAAACCGGACTACACGCCGGACTTTGTCTCAAGCGTGTTTGACGGGAGCCATGAG
CACATCGTATGCAGCAGCATACCGTCACTTTTATGGCTGGCTAATCAGCTGGCGCTTGAATTTCACGTTCCGTTTCAGAC
AGTGCATTCTGAAAGGCCCGCAGAAATCGTCATTGATCTTGATCCTCCGTCAAGGAATGATTTTCCTATGGCAGTGGAGG
CTGCGCATGTGCTGAAACAGCTGTTTGACTCATTCAGCATTACGTCATTCCCGAAGCTCTCCGGAAATAAAGGCATTCAG
CTCTACATCCCGCTTTCACCGGAAGCATTCACCTATGAAGAAACCCGTGCGTTCACAATGCTCATCGCCGATTATTGCGT
CAGGACGCGGCCGGATCTTTTTACGACAGAGCGGTTTATCAAAAACCGAAACGGCAGGCTCTACCTAGATTATTTGCAGC
ATGCCGAAGGGAAAACCATTATCGCCCCCTATTCGACCCGGGGCAACGAATTGGGAACGGTTGCGGCTCCCCTTTATTGG
AGCGAAGTCAACTCCTCTTTAACACCCGATGATTATACGATCGATACAGTAGTGAACCGCGTCAGGACAGAGGGAGATCC
GTTTTATGATTTTTACAGGAATCCGCAGGACGGCCCGCTTTCAATCGTGCTTGAGCAAATCAAGAGAAAGAGCTGA

Upstream 100 bases:

>100_bases
GCGAACAGGCTGCGCCGGCGCGGACAAAAGACGCCGCGTCAGCAGGCGGCGGAGGCAAAAAGCAGAAGACGACCAGACAA
AAAGCCGGAACGTCTTAATC

Downstream 100 bases:

>100_bases
CGCTTTTTGTCAGCTCTTTTCAGTCTGATACGTGCACATCAATTTTTCTTTGGAAATAAATAAATAGCAGGAGTAAGGAA
TGTTTTTGAGGGTGAGCTGT

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MVLTMQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFAARCFQHMKDRFPITLDGELV
YLINPYRADFEHLQIRGRLKRTEAIESTADRRPCRFLAFDLLVLEGAGTVSLPYVKRKRALSKLLKEANLPACPHHLAEE
AIQYIPEHTDFDALWDKVVRHDGEGIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPI
ASVSHGMQAEEKNAVRTIMETHGKKQNSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQFEMDWTECTYQQLILHSKTL
PPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLKDRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHE
HIVCSSIPSLLWLANQLALEFHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTIIAPYSTRGNELGTVAAPLYW
SEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPLSIVLEQIKRKS

Sequences:

>Translated_611_residues
MVLTMQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFAARCFQHMKDRFPITLDGELV
YLINPYRADFEHLQIRGRLKRTEAIESTADRRPCRFLAFDLLVLEGAGTVSLPYVKRKRALSKLLKEANLPACPHHLAEE
AIQYIPEHTDFDALWDKVVRHDGEGIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPI
ASVSHGMQAEEKNAVRTIMETHGKKQNSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQFEMDWTECTYQQLILHSKTL
PPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLKDRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHE
HIVCSSIPSLLWLANQLALEFHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTIIAPYSTRGNELGTVAAPLYW
SEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPLSIVLEQIKRKS
>Mature_611_residues
MVLTMQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFAARCFQHMKDRFPITLDGELV
YLINPYRADFEHLQIRGRLKRTEAIESTADRRPCRFLAFDLLVLEGAGTVSLPYVKRKRALSKLLKEANLPACPHHLAEE
AIQYIPEHTDFDALWDKVVRHDGEGIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPI
ASVSHGMQAEEKNAVRTIMETHGKKQNSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQFEMDWTECTYQQLILHSKTL
PPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLKDRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHE
HIVCSSIPSLLWLANQLALEFHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTIIAPYSTRGNELGTVAAPLYW
SEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPLSIVLEQIKRKS

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 69802; Mature: 69802

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS00697 DNA_LIGASE_A1 ; PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLTMQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFA
CEEECCHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCCEEECCCCCCHHHCCCHHHHHH
ARCFQHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLKRTEAIESTADRRPCRFLAFD
HHHHHHHHHCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHEEE
LLVLEGAGTVSLPYVKRKRALSKLLKEANLPACPHHLAEEAIQYIPEHTDFDALWDKVVR
EHEECCCCCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
HDGEGIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPI
CCCCCEEEECCCCCCCCCCCCCCHHHHHHHCEEEEEEEECCCCCCEEEEEECCCCCCCCH
ASVSHGMQAEEKNAVRTIMETHGKKQNSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQ
HHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHEEEEEE
FEMDWTECTYQQLILHSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLK
EECCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSSIPSLLWLANQLALE
CCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHEEE
FHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
EECCHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
EEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEHHCCCCCEE
IAPYSTRGNELGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPL
EEECCCCCCCCCEEECCEEHHHCCCCCCCCCEEHHHHHHHHHCCCCCCHHHCCCCCCCHH
SIVLEQIKRKS
HHHHHHHHHCC
>Mature Secondary Structure
MVLTMQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFA
CEEECCHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCCEEECCCCCCHHHCCCHHHHHH
ARCFQHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLKRTEAIESTADRRPCRFLAFD
HHHHHHHHHCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHEEE
LLVLEGAGTVSLPYVKRKRALSKLLKEANLPACPHHLAEEAIQYIPEHTDFDALWDKVVR
EHEECCCCCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
HDGEGIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPI
CCCCCEEEECCCCCCCCCCCCCCHHHHHHHCEEEEEEEECCCCCCEEEEEECCCCCCCCH
ASVSHGMQAEEKNAVRTIMETHGKKQNSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQ
HHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHEEEEEE
FEMDWTECTYQQLILHSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLK
EECCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSSIPSLLWLANQLALE
CCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHEEE
FHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
EECCHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
EEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEHHCCCCCEE
IAPYSTRGNELGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPL
EEECCCCCCCCCEEECCEEHHHCCCCCCCCCEEHHHHHHHHHCCCCCCHHHCCCCCCCHH
SIVLEQIKRKS
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]