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The map label for this gene is tnrA [H]

Identifier: 154685746

GI number: 154685746

Start: 1276813

End: 1277145

Strand: Reverse

Name: tnrA [H]

Synonym: RBAM_013130

Alternate gene names: 154685746

Gene position: 1277145-1276813 (Counterclockwise)

Preceding gene: 154685751

Following gene: 154685742

Centisome position: 32.59

GC content: 43.84

Gene sequence:

>333_bases
ATGACGACAGACGAACAATCTTACAAAGATAAAAAAGTAATCTCGATCGGCATTGTAAGCGAATTAACCGGATTGTCAGT
CAGACAGATCAGATACTATGAAGAACGGAAATTAATCTATCCGCAGCGTTCATCACGGGGAACGAGAAAGTATTCCTTCG
CGGACGTTGAGCGGCTGATGGATATTGCCAACAAGCGGGAAGACGGCGTGCAGACGGCTGAGATTTTAAAAGACATGCGA
AAAAAAGAACAGGCTCTCAAAAACGACCCGCAGCTCCGCAAAAAAATGCTGGAAGGACAGCTTAATGCTCATTTTAAGTA
TAAAAACCGCTGA

Upstream 100 bases:

>100_bases
TCTAAAATTTTCTATTCCGCGTCAGAAAACCTGACAAGCGTCAGGTTTTTTCTCTTTTTTTCTTATATAATATGAGTAAA
AGACATCCAGGGGTGGGAAA

Downstream 100 bases:

>100_bases
TCAAAAAAGTCCGCCTCCTGTGAGACGGACTTTTTTTATAAAGCATGAAGAAATGCAGTTGCAATGCCGAAATAAATTAA
TAAGGACAAAATATCGTTCA

Product: TnrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MTTDEQSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRSSRGTRKYSFADVERLMDIANKREDGVQTAEILKDMR
KKEQALKNDPQLRKKMLEGQLNAHFKYKNR

Sequences:

>Translated_110_residues
MTTDEQSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRSSRGTRKYSFADVERLMDIANKREDGVQTAEILKDMR
KKEQALKNDPQLRKKMLEGQLNAHFKYKNR
>Mature_109_residues
TTDEQSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRSSRGTRKYSFADVERLMDIANKREDGVQTAEILKDMRK
KEQALKNDPQLRKKMLEGQLNAHFKYKNR

Specific function: Regulator of transcription that activates or represses many genes during nitrogen-limited growth; among others, it activates nrgAB, nasABCDE, gabP, and represses glnRA [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 13043; Mature: 12912

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDEQSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRSSRGTRKYSFADVERLM
CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
DIANKREDGVQTAEILKDMRKKEQALKNDPQLRKKMLEGQLNAHFKYKNR
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHCCCEEECCC
>Mature Secondary Structure 
TTDEQSYKDKKVISIGIVSELTGLSVRQIRYYEERKLIYPQRSSRGTRKYSFADVERLM
CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
DIANKREDGVQTAEILKDMRKKEQALKNDPQLRKKMLEGQLNAHFKYKNR
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8799114; 9384377; 11719184 [H]