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The map label for this gene is ykgB [H]

Identifier: 154685719

GI number: 154685719

Start: 1250153

End: 1251202

Strand: Reverse

Name: ykgB [H]

Synonym: RBAM_012860

Alternate gene names: 154685719

Gene position: 1251202-1250153 (Counterclockwise)

Preceding gene: 154685720

Following gene: 154685708

Centisome position: 31.93

GC content: 48.95

Gene sequence:

>1050_bases
ATGGCTAAGTACATAGGATACGCGGGAACATATACAAAAGGCGGAAGCGAAGGCATTTATTGTTTTGAACTTGATACAGA
AGCGAAACGGCTCAGCCGTCCGAAGCTGGCAGCAAAGCTCGGCAACCCGACATACGTCACTCCGAATTCTGATAACAGCA
TGCTGTATTCCATTGAAAAGGCAGACGGAAAAGGCGGCGTCGCAGCCTATCAGATTCATCAGAACAGCGGGGAGTTAACT
TTTGTGAACCACCAGCTGATTGAAGGCCCGTCTCCATGCCACGTCAGCATTGATGATAAACATGAATATGTGTTAACCGC
TAATTACCACAGCGGAAAAGTGCACGCCTTTCCCGTCAATGAAGACGGAAGTCTGCGGGAGCCGGCTGCCGAAGCCGCTC
ATACGGGAACAGGTCCTCATGAAAGACAAGAGAAACCGCATACCCATTTCGCAGGCTATACACCTGAGCATAACTACATT
GCAGCCGTCGATTTAGGGACGGATACGCTTTATACTTACCAAATGAAAAACGGTTCGCTCACAGAGGTGAAAACTCACTC
TTTCGCACCGGGTTCAGGGCCGCGCCACATCGTTTTCCATCCGGCGGAAAAATACGCCTATGTCATGACGGAAATCAGTA
ATGAAGTCATTGCGCTTGAATACAACCCGACCTTAGGTGAATTCAGAGAGCTGCAGGTCATTTCCGCTTTGCCTGAAGGC
TTTACGGACAAATCGCAAGGCAGCGCGATCCGCATATCTAAAGACGGCAGATTTCTTTATGCTGCCAACCGCGGACATGA
CAGCATCGCCATCTATAAGATCAACCAATATTCCGGCGAATTGTCTCTTATTGAATGGGTGCCGACAGAAGGAAACTGGC
CGCGTGATTTCGCGTTTGACCCTTCTGAGACATTCCTTGTCGCGTCAAACGAAGAAACGGGAAATCTGGTTTTGTTTGAA
CGTGATCCGGAAACGGGCAAATTGACTCTGCTTCAATCTGACATTCCGGTTCCGTATCCGGTCTGCGTGTCATTTCTGCA
TCAGGTTTAA

Upstream 100 bases:

>100_bases
TGCACCTTGCCGCTTGTCAGAACATCTTAAACATTTACAAGGCAGTTTCCTTCAAGATACGTTAATATAGAGAAGACAAG
ACTCTAAAGGGGGAAACCGA

Downstream 100 bases:

>100_bases
TTAAAAAAGAAAGCTGACTTTATATTGTCAGCTTTCTTTTTTGTATAAATGGCAGGCGACAAAACGCCCCGCCTTCACTT
CTTCAAGCTCAGGCGTTATC

Product: YkgB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MAKYIGYAGTYTKGGSEGIYCFELDTEAKRLSRPKLAAKLGNPTYVTPNSDNSMLYSIEKADGKGGVAAYQIHQNSGELT
FVNHQLIEGPSPCHVSIDDKHEYVLTANYHSGKVHAFPVNEDGSLREPAAEAAHTGTGPHERQEKPHTHFAGYTPEHNYI
AAVDLGTDTLYTYQMKNGSLTEVKTHSFAPGSGPRHIVFHPAEKYAYVMTEISNEVIALEYNPTLGEFRELQVISALPEG
FTDKSQGSAIRISKDGRFLYAANRGHDSIAIYKINQYSGELSLIEWVPTEGNWPRDFAFDPSETFLVASNEETGNLVLFE
RDPETGKLTLLQSDIPVPYPVCVSFLHQV

Sequences:

>Translated_349_residues
MAKYIGYAGTYTKGGSEGIYCFELDTEAKRLSRPKLAAKLGNPTYVTPNSDNSMLYSIEKADGKGGVAAYQIHQNSGELT
FVNHQLIEGPSPCHVSIDDKHEYVLTANYHSGKVHAFPVNEDGSLREPAAEAAHTGTGPHERQEKPHTHFAGYTPEHNYI
AAVDLGTDTLYTYQMKNGSLTEVKTHSFAPGSGPRHIVFHPAEKYAYVMTEISNEVIALEYNPTLGEFRELQVISALPEG
FTDKSQGSAIRISKDGRFLYAANRGHDSIAIYKINQYSGELSLIEWVPTEGNWPRDFAFDPSETFLVASNEETGNLVLFE
RDPETGKLTLLQSDIPVPYPVCVSFLHQV
>Mature_348_residues
AKYIGYAGTYTKGGSEGIYCFELDTEAKRLSRPKLAAKLGNPTYVTPNSDNSMLYSIEKADGKGGVAAYQIHQNSGELTF
VNHQLIEGPSPCHVSIDDKHEYVLTANYHSGKVHAFPVNEDGSLREPAAEAAHTGTGPHERQEKPHTHFAGYTPEHNYIA
AVDLGTDTLYTYQMKNGSLTEVKTHSFAPGSGPRHIVFHPAEKYAYVMTEISNEVIALEYNPTLGEFRELQVISALPEGF
TDKSQGSAIRISKDGRFLYAANRGHDSIAIYKINQYSGELSLIEWVPTEGNWPRDFAFDPSETFLVASNEETGNLVLFER
DPETGKLTLLQSDIPVPYPVCVSFLHQV

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786983, Length=320, Percent_Identity=29.0625, Blast_Score=112, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943 [H]

Pfam domain/function: PF10282 DUF2394 [H]

EC number: NA

Molecular weight: Translated: 38564; Mature: 38433

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYIGYAGTYTKGGSEGIYCFELDTEAKRLSRPKLAAKLGNPTYVTPNSDNSMLYSIEK
CCCEEECCCCCCCCCCCCEEEEEECCHHHHHCCCCHHHHCCCCEEEECCCCCCEEEEEEE
ADGKGGVAAYQIHQNSGELTFVNHQLIEGPSPCHVSIDDKHEYVLTANYHSGKVHAFPVN
CCCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECC
EDGSLREPAAEAAHTGTGPHERQEKPHTHFAGYTPEHNYIAAVDLGTDTLYTYQMKNGSL
CCCCCCCCHHHHHCCCCCCCHHCCCCCCEECCCCCCCCEEEEEECCCCEEEEEEECCCCE
TEVKTHSFAPGSGPRHIVFHPAEKYAYVMTEISNEVIALEYNPTLGEFRELQVISALPEG
EEEEECCCCCCCCCCEEEEECHHHEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCC
FTDKSQGSAIRISKDGRFLYAANRGHDSIAIYKINQYSGELSLIEWVPTEGNWPRDFAFD
CCCCCCCCEEEEECCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCC
PSETFLVASNEETGNLVLFERDPETGKLTLLQSDIPVPYPVCVSFLHQV
CCCEEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
AKYIGYAGTYTKGGSEGIYCFELDTEAKRLSRPKLAAKLGNPTYVTPNSDNSMLYSIEK
CCEEECCCCCCCCCCCCEEEEEECCHHHHHCCCCHHHHCCCCEEEECCCCCCEEEEEEE
ADGKGGVAAYQIHQNSGELTFVNHQLIEGPSPCHVSIDDKHEYVLTANYHSGKVHAFPVN
CCCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECC
EDGSLREPAAEAAHTGTGPHERQEKPHTHFAGYTPEHNYIAAVDLGTDTLYTYQMKNGSL
CCCCCCCCHHHHHCCCCCCCHHCCCCCCEECCCCCCCCEEEEEECCCCEEEEEEECCCCE
TEVKTHSFAPGSGPRHIVFHPAEKYAYVMTEISNEVIALEYNPTLGEFRELQVISALPEG
EEEEECCCCCCCCCCEEEEECHHHEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCC
FTDKSQGSAIRISKDGRFLYAANRGHDSIAIYKINQYSGELSLIEWVPTEGNWPRDFAFD
CCCCCCCCEEEEECCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCC
PSETFLVASNEETGNLVLFERDPETGKLTLLQSDIPVPYPVCVSFLHQV
CCCEEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]