Definition Bacillus amyloliquefaciens FZB42, complete genome.
Accession NC_009725
Length 3,918,589

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The map label for this gene is ykbA [H]

Identifier: 154685704

GI number: 154685704

Start: 1231192

End: 1232508

Strand: Reverse

Name: ykbA [H]

Synonym: RBAM_012710

Alternate gene names: 154685704

Gene position: 1232508-1231192 (Counterclockwise)

Preceding gene: 154685708

Following gene: 154685703

Centisome position: 31.45

GC content: 50.19

Gene sequence:

>1317_bases
ATGCAGATTGAAGAGAACGGACTTAAAAAAGAGATCGGCCTTACCATCGCCCTCTCACTTGTTATCGGCACCATCATCGG
TTCCGGCGTATTTATGAAACCAGGCGCCGTGCTTGCCTACTCCGGTGATGCGAAAACCGCGCTTATCGCGTGGCTGTTAG
GAGGCATTTTGACGCTTGCCGGCGGCTTGACCGTTGCGGAAATCGGCACTCAGATTCCGAAAACGGGCGGACTTTATACA
TATCTAGAAGAAGTGTACGGCGAATTTTGGGGCTTTTTGTGCGGATGGGTTCAAATTATCATTTACGGCCCCGCCATTAT
CGGAGCAATCGGCTTGTATTTCGGCTCCTTGATGGCGCACTTGTTCAATTGGGATTCCGGCTGGTCTAAATTGATCGGGA
TTTCAGCCGTTTTGTTTTTAAGCATCATTAACATTATCGGAACGAAATATGGCGGCATCGTCCAGGGAATTACGACTGTC
GGCAAATTGATTCCGATTATCTGCATGATCGTATTCGGCCTTTGGAAAGGCGATCAGCATATTTTTACAGCCGTTACAAG
CAGCATGTCGGACATGAATTTCGGCGCTGCCATACTGGCCACCTTGTTTGCTTATGACGGATGGATTCTGCTTGCGGCAC
TCGGCGGCGAAATGAAAAATCCGGAAAAGCTGCTCCCGAGAGCGATGACGGGCGGACTGCTGGTCGTCACCGCCATTTAT
CTTTTCATTAACTTTGCGCTGCTGCACATTCTTCCTGCGACCGACATCGTCAAACTCGGTGAAAATGCGACCGGCACCGC
TGCCGGAATGCTGTTTGGCGACATCGGAGGAAAATTGATCAGCGTCGGAATCATCGTCAGCATCTTCGGCTGTTTAAACG
GAAAGATTCTCGCTTTTCCGCGTGTCTCGTTTGCGATGGCGGAACGGAAACAGCTGCCGTTTGCCGGACAGATTTCGCGG
GTGCATCCGACGTTCCGCACCCCGTGGATTGCCGTGTCATTTCAGATCGCGCTGGCCATTATTTTTATGATCGCCAGCAA
TCCCGATAAGCTGTCTGAAATCTCTATTTTCATGATTTATATTTTTTACGTCATGGCCTTTTTCGCCGTGTTTATCCTCA
GAAAAAAAAGCGGCGGAAAACCGCGCGCCTACAGCGTGCCTTTGTATCCGATCATTCCTGTTTTGGCCATCGCGGGTTCA
CTGTTTGTGCTGATCAGCACGATCATTACAGATACACTGAGCTGCGCGCTGTCCCTCTTGATCGGCCTCGCCGGGCTGCC
GCTTTATTTTTGGCTGAAAAACGGCAGAAAAAACTGA

Upstream 100 bases:

>100_bases
AAATCAGAAAATTTATTTTATTCGTGTTTCAGCAATTAGGGTTTACAATATGGAAAATAGTTTTTTCAGCATGACGATTT
TACATCTGGAGGGATAGGAT

Downstream 100 bases:

>100_bases
CAAAAACGGTTCCTTTTACGGGAGCCGTTTTTTTTCTGGCAAAATCACGTGCAAAAGTTGACAGCAAATTCACATCTTTT
GTTATACTTTTTAAGCAAGA

Product: YkbA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MQIEENGLKKEIGLTIALSLVIGTIIGSGVFMKPGAVLAYSGDAKTALIAWLLGGILTLAGGLTVAEIGTQIPKTGGLYT
YLEEVYGEFWGFLCGWVQIIIYGPAIIGAIGLYFGSLMAHLFNWDSGWSKLIGISAVLFLSIINIIGTKYGGIVQGITTV
GKLIPIICMIVFGLWKGDQHIFTAVTSSMSDMNFGAAILATLFAYDGWILLAALGGEMKNPEKLLPRAMTGGLLVVTAIY
LFINFALLHILPATDIVKLGENATGTAAGMLFGDIGGKLISVGIIVSIFGCLNGKILAFPRVSFAMAERKQLPFAGQISR
VHPTFRTPWIAVSFQIALAIIFMIASNPDKLSEISIFMIYIFYVMAFFAVFILRKKSGGKPRAYSVPLYPIIPVLAIAGS
LFVLISTIITDTLSCALSLLIGLAGLPLYFWLKNGRKN

Sequences:

>Translated_438_residues
MQIEENGLKKEIGLTIALSLVIGTIIGSGVFMKPGAVLAYSGDAKTALIAWLLGGILTLAGGLTVAEIGTQIPKTGGLYT
YLEEVYGEFWGFLCGWVQIIIYGPAIIGAIGLYFGSLMAHLFNWDSGWSKLIGISAVLFLSIINIIGTKYGGIVQGITTV
GKLIPIICMIVFGLWKGDQHIFTAVTSSMSDMNFGAAILATLFAYDGWILLAALGGEMKNPEKLLPRAMTGGLLVVTAIY
LFINFALLHILPATDIVKLGENATGTAAGMLFGDIGGKLISVGIIVSIFGCLNGKILAFPRVSFAMAERKQLPFAGQISR
VHPTFRTPWIAVSFQIALAIIFMIASNPDKLSEISIFMIYIFYVMAFFAVFILRKKSGGKPRAYSVPLYPIIPVLAIAGS
LFVLISTIITDTLSCALSLLIGLAGLPLYFWLKNGRKN
>Mature_438_residues
MQIEENGLKKEIGLTIALSLVIGTIIGSGVFMKPGAVLAYSGDAKTALIAWLLGGILTLAGGLTVAEIGTQIPKTGGLYT
YLEEVYGEFWGFLCGWVQIIIYGPAIIGAIGLYFGSLMAHLFNWDSGWSKLIGISAVLFLSIINIIGTKYGGIVQGITTV
GKLIPIICMIVFGLWKGDQHIFTAVTSSMSDMNFGAAILATLFAYDGWILLAALGGEMKNPEKLLPRAMTGGLLVVTAIY
LFINFALLHILPATDIVKLGENATGTAAGMLFGDIGGKLISVGIIVSIFGCLNGKILAFPRVSFAMAERKQLPFAGQISR
VHPTFRTPWIAVSFQIALAIIFMIASNPDKLSEISIFMIYIFYVMAFFAVFILRKKSGGKPRAYSVPLYPIIPVLAIAGS
LFVLISTIITDTLSCALSLLIGLAGLPLYFWLKNGRKN

Specific function: Exhibits an obligate exchange activity for serine, threonine and aromatic amino acids [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. L-type amino acid transporter (LAT) (TC 2.A.3.8) family [H]

Homologues:

Organism=Homo sapiens, GI115648063, Length=446, Percent_Identity=30.7174887892377, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI115648022, Length=446, Percent_Identity=30.7174887892377, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI186910308, Length=437, Percent_Identity=30.8924485125858, Blast_Score=186, Evalue=4e-47,
Organism=Homo sapiens, GI186910306, Length=437, Percent_Identity=30.8924485125858, Blast_Score=186, Evalue=4e-47,
Organism=Homo sapiens, GI186910304, Length=437, Percent_Identity=30.8924485125858, Blast_Score=186, Evalue=4e-47,
Organism=Homo sapiens, GI33286428, Length=441, Percent_Identity=30.6122448979592, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI187423910, Length=441, Percent_Identity=29.0249433106576, Blast_Score=159, Evalue=5e-39,
Organism=Homo sapiens, GI7657591, Length=441, Percent_Identity=29.0249433106576, Blast_Score=159, Evalue=5e-39,
Organism=Homo sapiens, GI7657683, Length=449, Percent_Identity=30.0668151447661, Blast_Score=149, Evalue=5e-36,
Organism=Homo sapiens, GI71979932, Length=446, Percent_Identity=29.8206278026906, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI9790235, Length=439, Percent_Identity=29.1571753986333, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI33286430, Length=235, Percent_Identity=28.936170212766, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI71999149, Length=391, Percent_Identity=23.7851662404092, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI258614003, Length=423, Percent_Identity=22.2222222222222, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI258614005, Length=423, Percent_Identity=22.2222222222222, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI258645169, Length=424, Percent_Identity=22.1698113207547, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI114326544, Length=426, Percent_Identity=23.7089201877934, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI114326550, Length=426, Percent_Identity=23.7089201877934, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI110347453, Length=344, Percent_Identity=22.6744186046512, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI87082250, Length=444, Percent_Identity=26.1261261261261, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI2367353, Length=402, Percent_Identity=26.865671641791, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786694, Length=318, Percent_Identity=24.8427672955975, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787890, Length=377, Percent_Identity=24.4031830238727, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI87081708, Length=426, Percent_Identity=22.0657276995305, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1790584, Length=328, Percent_Identity=26.5243902439024, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789017, Length=337, Percent_Identity=25.5192878338279, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17540018, Length=444, Percent_Identity=28.1531531531532, Blast_Score=147, Evalue=8e-36,
Organism=Caenorhabditis elegans, GI17568033, Length=446, Percent_Identity=27.3542600896861, Blast_Score=138, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI71993915, Length=400, Percent_Identity=27, Blast_Score=125, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71990446, Length=367, Percent_Identity=28.0653950953678, Blast_Score=121, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI71982612, Length=446, Percent_Identity=26.6816143497758, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71982608, Length=446, Percent_Identity=26.6816143497758, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71995382, Length=442, Percent_Identity=26.6968325791855, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71995388, Length=442, Percent_Identity=26.6968325791855, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI32566695, Length=438, Percent_Identity=25.5707762557078, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI193208714, Length=435, Percent_Identity=25.7471264367816, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI32566699, Length=324, Percent_Identity=28.7037037037037, Blast_Score=111, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI71987339, Length=453, Percent_Identity=26.4900662251656, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71982623, Length=273, Percent_Identity=26.7399267399267, Blast_Score=86, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17532491, Length=334, Percent_Identity=24.251497005988, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17531343, Length=329, Percent_Identity=22.7963525835866, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17533459, Length=403, Percent_Identity=24.317617866005, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321751, Length=350, Percent_Identity=25.7142857142857, Blast_Score=97, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6321492, Length=357, Percent_Identity=23.5294117647059, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24651635, Length=438, Percent_Identity=28.7671232876712, Blast_Score=166, Evalue=3e-41,
Organism=Drosophila melanogaster, GI24651633, Length=438, Percent_Identity=28.7671232876712, Blast_Score=166, Evalue=3e-41,
Organism=Drosophila melanogaster, GI221331183, Length=443, Percent_Identity=28.6681715575621, Blast_Score=156, Evalue=3e-38,
Organism=Drosophila melanogaster, GI17647653, Length=443, Percent_Identity=28.6681715575621, Blast_Score=156, Evalue=3e-38,
Organism=Drosophila melanogaster, GI24664379, Length=443, Percent_Identity=28.6681715575621, Blast_Score=156, Evalue=3e-38,
Organism=Drosophila melanogaster, GI24641993, Length=399, Percent_Identity=29.0726817042606, Blast_Score=154, Evalue=9e-38,
Organism=Drosophila melanogaster, GI24641995, Length=399, Percent_Identity=29.0726817042606, Blast_Score=154, Evalue=9e-38,
Organism=Drosophila melanogaster, GI45550968, Length=444, Percent_Identity=28.8288288288288, Blast_Score=147, Evalue=1e-35,
Organism=Drosophila melanogaster, GI19921172, Length=444, Percent_Identity=28.8288288288288, Blast_Score=147, Evalue=1e-35,
Organism=Drosophila melanogaster, GI21357367, Length=454, Percent_Identity=27.0925110132159, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI24667468, Length=398, Percent_Identity=24.1206030150754, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24666159, Length=356, Percent_Identity=24.1573033707865, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI221512776, Length=356, Percent_Identity=23.876404494382, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI281366235, Length=359, Percent_Identity=23.9554317548747, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007820, Length=359, Percent_Identity=23.9554317548747, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24668806, Length=414, Percent_Identity=23.6714975845411, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21356285, Length=414, Percent_Identity=23.6714975845411, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24668802, Length=414, Percent_Identity=23.6714975845411, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007818, Length=383, Percent_Identity=24.5430809399478, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85725152, Length=383, Percent_Identity=24.5430809399478, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 46954; Mature: 46954

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MQIEENGLKKEIGLTIALSLVIGTIIGSGVFMKPGAVLAYSGDAKTALIAWLLGGILTLA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCHHHHHHHHHHHHHHHH
GGLTVAEIGTQIPKTGGLYTYLEEVYGEFWGFLCGWVQIIIYGPAIIGAIGLYFGSLMAH
CCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFNWDSGWSKLIGISAVLFLSIINIIGTKYGGIVQGITTVGKLIPIICMIVFGLWKGDQH
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
IFTAVTSSMSDMNFGAAILATLFAYDGWILLAALGGEMKNPEKLLPRAMTGGLLVVTAIY
HHHHHHHHHHCCCHHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHCCHHHHHHHHH
LFINFALLHILPATDIVKLGENATGTAAGMLFGDIGGKLISVGIIVSIFGCLNGKILAFP
HHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEC
RVSFAMAERKQLPFAGQISRVHPTFRTPWIAVSFQIALAIIFMIASNPDKLSEISIFMIY
CHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IFYVMAFFAVFILRKKSGGKPRAYSVPLYPIIPVLAIAGSLFVLISTIITDTLSCALSLL
HHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLAGLPLYFWLKNGRKN
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQIEENGLKKEIGLTIALSLVIGTIIGSGVFMKPGAVLAYSGDAKTALIAWLLGGILTLA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCHHHHHHHHHHHHHHHH
GGLTVAEIGTQIPKTGGLYTYLEEVYGEFWGFLCGWVQIIIYGPAIIGAIGLYFGSLMAH
CCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFNWDSGWSKLIGISAVLFLSIINIIGTKYGGIVQGITTVGKLIPIICMIVFGLWKGDQH
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
IFTAVTSSMSDMNFGAAILATLFAYDGWILLAALGGEMKNPEKLLPRAMTGGLLVVTAIY
HHHHHHHHHHCCCHHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHCCHHHHHHHHH
LFINFALLHILPATDIVKLGENATGTAAGMLFGDIGGKLISVGIIVSIFGCLNGKILAFP
HHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEC
RVSFAMAERKQLPFAGQISRVHPTFRTPWIAVSFQIALAIIFMIASNPDKLSEISIFMIY
CHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IFYVMAFFAVFILRKKSGGKPRAYSVPLYPIIPVLAIAGSLFVLISTIITDTLSCALSLL
HHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLAGLPLYFWLKNGRKN
HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]