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The map label for this gene is yhdE [H]

Identifier: 154685398

GI number: 154685398

Start: 942089

End: 942523

Strand: Reverse

Name: yhdE [H]

Synonym: RBAM_009640

Alternate gene names: 154685398

Gene position: 942523-942089 (Counterclockwise)

Preceding gene: 154685399

Following gene: 154685397

Centisome position: 24.05

GC content: 42.53

Gene sequence:

>435_bases
ATGAAATTAACGAACTATACCGATTATTCTTTACGCGTTTTGATTTTTTTGGCTTCCAGACATTCCGACGAACTTTCCAA
CATAAAAGAAATCGCAGATACTTATTCCATCTCTAAAAACCACCTCATGAAAGTCATTTACCGCCTCGGCCAGCTCGGGT
ATGTCGAAACGATCCGGGGCCGGGGAGGCGGAATCCGATTAGGAATGACACCGGAAGACATAAACATTGGAGAAGTCGTT
CGAAATACAGAAGACGACTTTAACATCGTAGAATGCTTTGACTCCCAAAAAAATCTCTGTATCATATCTCCCGCCTGCAA
CTTAAAGAACCTTCTGAATGAAGCCCTGCAAGCTTACCTGGCCGTTTTAGACAAATATACGTTAAGGGATCTGGTCAAAA
ACAAAGAGGAGATTATGAGACTGCTCAGAAGCTGA

Upstream 100 bases:

>100_bases
TTTTTTTTTGAGTTAAGGGGGCAAATTCCTTTTTTTTCATTTTAGATTCATATATGATAGACTGTAACAGAAGCAAAATC
TCTTTTTTCGAGGTCATTCT

Downstream 100 bases:

>100_bases
AGGAATGCCCGCATTCCTTCTTTTTTTATGCCGGCATAAGAAAAAAGGACTATTTCTATTAATATGATAAACGATTGCAG
ACAAGTGCCGATATAAAGAT

Product: YhdE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKLTNYTDYSLRVLIFLASRHSDELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRGRGGGIRLGMTPEDINIGEVV
RNTEDDFNIVECFDSQKNLCIISPACNLKNLLNEALQAYLAVLDKYTLRDLVKNKEEIMRLLRS

Sequences:

>Translated_144_residues
MKLTNYTDYSLRVLIFLASRHSDELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRGRGGGIRLGMTPEDINIGEVV
RNTEDDFNIVECFDSQKNLCIISPACNLKNLLNEALQAYLAVLDKYTLRDLVKNKEEIMRLLRS
>Mature_144_residues
MKLTNYTDYSLRVLIFLASRHSDELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRGRGGGIRLGMTPEDINIGEVV
RNTEDDFNIVECFDSQKNLCIISPACNLKNLLNEALQAYLAVLDKYTLRDLVKNKEEIMRLLRS

Specific function: Nitric oxide-responsive transcriptional regulator. It represses the expression of flavohemoprotein hmp and the nitrite reductase nasD. Probably plays a role in the up-regulation of the resDE regulon in the presence of nitric oxide [H]

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790621, Length=142, Percent_Identity=44.3661971830986, Blast_Score=131, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 16488; Mature: 16488

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTNYTDYSLRVLIFLASRHSDELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCC
RGGGIRLGMTPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLNEALQAYL
CCCEEEECCCCCCCCHHHHHHCCCCCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH
AVLDKYTLRDLVKNKEEIMRLLRS
HHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MKLTNYTDYSLRVLIFLASRHSDELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCC
RGGGIRLGMTPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLNEALQAYL
CCCEEEECCCCCCCCHHHHHHCCCCCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH
AVLDKYTLRDLVKNKEEIMRLLRS
HHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]