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The map label for this gene is yfhF [H]

Identifier: 154685312

GI number: 154685312

Start: 852932

End: 853831

Strand: Reverse

Name: yfhF [H]

Synonym: RBAM_008580

Alternate gene names: 154685312

Gene position: 853831-852932 (Counterclockwise)

Preceding gene: 154685316

Following gene: 154685311

Centisome position: 21.79

GC content: 52.0

Gene sequence:

>900_bases
ATGAATATCGCGATGACAGGCGGCACTGGTTTTCTGGGCCGGCATCTGACAGGTGTGTTTACCCGCCGGGGACATCATGT
CTATATTTTATCAAGAAAACAGAGAGAAACCGAACAAAAAAATGTGACATATGTTCAATGGCTGGCCGAAAACGCGGCGC
CTGAGCGCGAGCTTCCCCCTATTGATGTATGGGTGAACCTCGCCGGCAAATCCATCTTTGACCGCTGGACGGACACAACG
AAGGAACAAATCATCTCAAGCAGACTAGAAGCGACGAGAGAAGTCAGACGGATTATGAAGCAGCAGCCGAAAAAACCCCG
GGCTTTGATTCAGGCCAGCGCCGTCGGCATTTACGGCACAAGCACAGAAAAAACGTTCACCGAACAGTCAGATACGTCAA
ATGAAGATTTTCTCAGTCATACGGCTCATATGTGGGAACGTGAAGGCCAGAAAATTGAAGCGCTCGGCATCCGGACGGTA
TATGCCAGATTCGGGGTGATGCTCGGTGAAAAAGGCGCCCTGCCGCTCATGGTTCTCCCTTATAAGCTGTTAGCCGGCGG
CACCATCGGCTCTGGACGGCAGTGGCTGTCATGGGTTCATGTGGATGACGCCGCGGAACTCATCGCTTTTGCGGCGGAGC
ATGATGACTTGTCCGGTCCCATGAATGTAACATCGCCGAACCCCGTGGAAATGAAGCAATTCGGAAAGACGATCGCAGGC
GTCCTGCACCGCCCCCATTGGATTCCCGTACCGGAACTTTTTCTGGAGAAGGCCTTGGGAGAAATGAGCCTGTTGATCGT
AAAAGGCCAGCGCGCCCTGCCTAAGCAGGCGCTGACATCCGGTTTTCAATTTACGTATGAAGAACTTGATTCCGCTTTAA
AGGATCTCTTATCTGCATAA

Upstream 100 bases:

>100_bases
AAACGGCATCCCGGTCTCCTTTCCCGCCCCGATGCTCAGGCGTTTTTCTTTTTGGCAAATGAGGTACAGTATATATATCA
ACGTGTAAGGAGAGATGGAT

Downstream 100 bases:

>100_bases
AAACGGAAATAAAAGCCAATCCTATTGGTATTCTGTTTTGAAGGAGGGTCTTCTTTTATGGAAAAGAAGCGCGAAAAACA
TCAGCAGGGAGCCAATCTGA

Product: YfhF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNIAMTGGTGFLGRHLTGVFTRRGHHVYILSRKQRETEQKNVTYVQWLAENAAPERELPPIDVWVNLAGKSIFDRWTDTT
KEQIISSRLEATREVRRIMKQQPKKPRALIQASAVGIYGTSTEKTFTEQSDTSNEDFLSHTAHMWEREGQKIEALGIRTV
YARFGVMLGEKGALPLMVLPYKLLAGGTIGSGRQWLSWVHVDDAAELIAFAAEHDDLSGPMNVTSPNPVEMKQFGKTIAG
VLHRPHWIPVPELFLEKALGEMSLLIVKGQRALPKQALTSGFQFTYEELDSALKDLLSA

Sequences:

>Translated_299_residues
MNIAMTGGTGFLGRHLTGVFTRRGHHVYILSRKQRETEQKNVTYVQWLAENAAPERELPPIDVWVNLAGKSIFDRWTDTT
KEQIISSRLEATREVRRIMKQQPKKPRALIQASAVGIYGTSTEKTFTEQSDTSNEDFLSHTAHMWEREGQKIEALGIRTV
YARFGVMLGEKGALPLMVLPYKLLAGGTIGSGRQWLSWVHVDDAAELIAFAAEHDDLSGPMNVTSPNPVEMKQFGKTIAG
VLHRPHWIPVPELFLEKALGEMSLLIVKGQRALPKQALTSGFQFTYEELDSALKDLLSA
>Mature_299_residues
MNIAMTGGTGFLGRHLTGVFTRRGHHVYILSRKQRETEQKNVTYVQWLAENAAPERELPPIDVWVNLAGKSIFDRWTDTT
KEQIISSRLEATREVRRIMKQQPKKPRALIQASAVGIYGTSTEKTFTEQSDTSNEDFLSHTAHMWEREGQKIEALGIRTV
YARFGVMLGEKGALPLMVLPYKLLAGGTIGSGRQWLSWVHVDDAAELIAFAAEHDDLSGPMNVTSPNPVEMKQFGKTIAG
VLHRPHWIPVPELFLEKALGEMSLLIVKGQRALPKQALTSGFQFTYEELDSALKDLLSA

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=303, Percent_Identity=32.013201320132, Blast_Score=177, Evalue=1e-44,
Organism=Escherichia coli, GI1788642, Length=302, Percent_Identity=36.4238410596026, Blast_Score=185, Evalue=3e-48,
Organism=Drosophila melanogaster, GI28573846, Length=295, Percent_Identity=29.1525423728814, Blast_Score=142, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 33467; Mature: 33467

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIAMTGGTGFLGRHLTGVFTRRGHHVYILSRKQRETEQKNVTYVQWLAENAAPERELPP
CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCHHHHHHHHCCCCCCCCCC
IDVWVNLAGKSIFDRWTDTTKEQIISSRLEATREVRRIMKQQPKKPRALIQASAVGIYGT
CEEEEEHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEC
STEKTFTEQSDTSNEDFLSHTAHMWEREGQKIEALGIRTVYARFGVMLGEKGALPLMVLP
CCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEHH
YKLLAGGTIGSGRQWLSWVHVDDAAELIAFAAEHDDLSGPMNVTSPNPVEMKQFGKTIAG
HHHHCCCCCCCCHHHHEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VLHRPHWIPVPELFLEKALGEMSLLIVKGQRALPKQALTSGFQFTYEELDSALKDLLSA
HHCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNIAMTGGTGFLGRHLTGVFTRRGHHVYILSRKQRETEQKNVTYVQWLAENAAPERELPP
CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCHHHHHHHHCCCCCCCCCC
IDVWVNLAGKSIFDRWTDTTKEQIISSRLEATREVRRIMKQQPKKPRALIQASAVGIYGT
CEEEEEHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEC
STEKTFTEQSDTSNEDFLSHTAHMWEREGQKIEALGIRTVYARFGVMLGEKGALPLMVLP
CCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEHH
YKLLAGGTIGSGRQWLSWVHVDDAAELIAFAAEHDDLSGPMNVTSPNPVEMKQFGKTIAG
HHHHCCCCCCCCHHHHEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VLHRPHWIPVPELFLEKALGEMSLLIVKGQRALPKQALTSGFQFTYEELDSALKDLLSA
HHCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]