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The map label for this gene is yvdT [H]

Identifier: 154685084

GI number: 154685084

Start: 597593

End: 598174

Strand: Reverse

Name: yvdT [H]

Synonym: RBAM_006220

Alternate gene names: 154685084

Gene position: 598174-597593 (Counterclockwise)

Preceding gene: 154685085

Following gene: 154685083

Centisome position: 15.27

GC content: 42.78

Gene sequence:

>582_bases
TTGGCAAAACAAAGCTCGGGAAAATACGAAAAGATCCTGCAAGCCGCGATTGAAGTCATTTCTGAAAAAGGATTAGACAA
AGCATCCATTTCAGAAATCGTCAAAAAAGCCGGAACGGCCCAAGGTACGTTTTACTTATATTTTTCTTCTAAAAACGCAC
TGATATCCGCGATTGCAGAAAACCTGCTCGACACTACGCTGGACAGAATAAAAGGGAAAACGGACGGTTCTGAAGATTTT
TGGACGTTGCTGGACATTTTGGTAGATGAGACATTTCACATCACCCGGCTTCATAAAGATATTATCGTTCTCTGTTATTC
CGGTCTTGCCATCGATCATTCAATGGAGAAATGGGAAGCCATTTATCAGCCTTATTATTCCTGGCTGGAAGGCGTGATCA
ATACGGCCATTGAACAGGGTGAGGTCCACAGCGGCATTCATGTCAGATGGACGGCCAGAACGATTATCAACGTTGTCGAG
AACGCGGCTGAACGGTTTTATATCGGCTGTGAACAGGATGTCGATCTCGAAGTATATAAAAAAGAAATATTCAGCTTTCT
CAAAAGAAGCTTGCAGAAATGA

Upstream 100 bases:

>100_bases
AGTATGGTCTTCTTTCCGGTATTTTTATTTTAAGGATGACAAAAAAGAGAACATGCGATAAAATGAATGACAGTCATTCA
TAAAAGGAGGAACCCCTCTA

Downstream 100 bases:

>100_bases
TTGGCAGAGACCGATCATTTTTGACCGCCGTAAAAATGACTGACATTCATTCATAACTGAGGTGACTGTATCATGTATTG
GCTGCTTGTATTGATAGCCG

Product: YvdT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAKQSSGKYEKILQAAIEVISEKGLDKASISEIVKKAGTAQGTFYLYFSSKNALISAIAENLLDTTLDRIKGKTDGSEDF
WTLLDILVDETFHITRLHKDIIVLCYSGLAIDHSMEKWEAIYQPYYSWLEGVINTAIEQGEVHSGIHVRWTARTIINVVE
NAAERFYIGCEQDVDLEVYKKEIFSFLKRSLQK

Sequences:

>Translated_193_residues
MAKQSSGKYEKILQAAIEVISEKGLDKASISEIVKKAGTAQGTFYLYFSSKNALISAIAENLLDTTLDRIKGKTDGSEDF
WTLLDILVDETFHITRLHKDIIVLCYSGLAIDHSMEKWEAIYQPYYSWLEGVINTAIEQGEVHSGIHVRWTARTIINVVE
NAAERFYIGCEQDVDLEVYKKEIFSFLKRSLQK
>Mature_192_residues
AKQSSGKYEKILQAAIEVISEKGLDKASISEIVKKAGTAQGTFYLYFSSKNALISAIAENLLDTTLDRIKGKTDGSEDFW
TLLDILVDETFHITRLHKDIIVLCYSGLAIDHSMEKWEAIYQPYYSWLEGVINTAIEQGEVHSGIHVRWTARTIINVVEN
AAERFYIGCEQDVDLEVYKKEIFSFLKRSLQK

Specific function: Repressor Involved In Choline Regulation Of The Bet Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21932; Mature: 21801

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQSSGKYEKILQAAIEVISEKGLDKASISEIVKKAGTAQGTFYLYFSSKNALISAIAE
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH
NLLDTTLDRIKGKTDGSEDFWTLLDILVDETFHITRLHKDIIVLCYSGLAIDHSMEKWEA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IYQPYYSWLEGVINTAIEQGEVHSGIHVRWTARTIINVVENAAERFYIGCEQDVDLEVYK
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHEECCCCCCCCHHHHH
KEIFSFLKRSLQK
HHHHHHHHHHHCC
>Mature Secondary Structure 
AKQSSGKYEKILQAAIEVISEKGLDKASISEIVKKAGTAQGTFYLYFSSKNALISAIAE
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH
NLLDTTLDRIKGKTDGSEDFWTLLDILVDETFHITRLHKDIIVLCYSGLAIDHSMEKWEA
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IYQPYYSWLEGVINTAIEQGEVHSGIHVRWTARTIINVVENAAERFYIGCEQDVDLEVYK
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHEECCCCCCCCHHHHH
KEIFSFLKRSLQK
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]