Click here to switch to the map view.

The map label for this gene is yvdR [H]

Identifier: 154685082

GI number: 154685082

Start: 596877

End: 597191

Strand: Reverse

Name: yvdR [H]

Synonym: RBAM_006200

Alternate gene names: 154685082

Gene position: 597191-596877 (Counterclockwise)

Preceding gene: 154685083

Following gene: 154685078

Centisome position: 15.24

GC content: 48.57

Gene sequence:

>315_bases
ATGGCATGGCTGCTGTTATTTATTGCCGGAGCGGAGGAAGTTGTAGCGGCCGTTGCCATGAAACATATTGACGGTTTTAA
AAAAAAGTGGCCGCTGATTGTCATGGTAACAGGCTTTATGCTTTCATTCTTTTGTCTTTCCGGAGCGATGCAGGTTCTTC
CCACAGGTGTCGCGTATGCGGCTTGGACCGGCATGGGAAGCATCGGCGTTTCGGCCGTGGGCATACTTTGGTTTAAAGAA
AAATTCAATCTGTCACAATTGGTGTCTCTGGGGCTTATCCTCATCGGTGTCATCGGCTTAAAACTGACAGCGTGA

Upstream 100 bases:

>100_bases
CGTTTTCAATCGGGCAAATATTCTTTTTGGCTTTGCTGTTGTCCGGCATTTTAGGAATGAAGGTATTTACGAAAGAAACT
GAAACAAGGGGTGAACATTA

Downstream 100 bases:

>100_bases
CGGCCTGAGACAGCTTTTCAAATAAAAAACAAAGGACCCTAAGCGGGCCCTTTGTTTTTTTATGCTGTTTTGATCTGTTC
CGCTTTTCCCGCTCCGACTC

Product: YvdR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MAWLLLFIAGAEEVVAAVAMKHIDGFKKKWPLIVMVTGFMLSFFCLSGAMQVLPTGVAYAAWTGMGSIGVSAVGILWFKE
KFNLSQLVSLGLILIGVIGLKLTA

Sequences:

>Translated_104_residues
MAWLLLFIAGAEEVVAAVAMKHIDGFKKKWPLIVMVTGFMLSFFCLSGAMQVLPTGVAYAAWTGMGSIGVSAVGILWFKE
KFNLSQLVSLGLILIGVIGLKLTA
>Mature_103_residues
AWLLLFIAGAEEVVAAVAMKHIDGFKKKWPLIVMVTGFMLSFFCLSGAMQVLPTGVAYAAWTGMGSIGVSAVGILWFKEK
FNLSQLVSLGLILIGVIGLKLTA

Specific function: Suppresses A Groel Mutation And Mimics The Effect Of Groe Overexpression. Could Act As A Chaperone. [C]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family [H]

Homologues:

Organism=Escherichia coli, GI87082378, Length=103, Percent_Identity=45.6310679611651, Blast_Score=90, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 11106; Mature: 10975

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWLLLFIAGAEEVVAAVAMKHIDGFKKKWPLIVMVTGFMLSFFCLSGAMQVLPTGVAYA
CCEEEEEHHCHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
AWTGMGSIGVSAVGILWFKEKFNLSQLVSLGLILIGVIGLKLTA
HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AWLLLFIAGAEEVVAAVAMKHIDGFKKKWPLIVMVTGFMLSFFCLSGAMQVLPTGVAYA
CEEEEEHHCHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
AWTGMGSIGVSAVGILWFKEKFNLSQLVSLGLILIGVIGLKLTA
HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]