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The map label for this gene is des [H]

Identifier: 154685000

GI number: 154685000

Start: 519671

End: 520699

Strand: Reverse

Name: des [H]

Synonym: RBAM_005380

Alternate gene names: 154685000

Gene position: 520699-519671 (Counterclockwise)

Preceding gene: 154685003

Following gene: 154684998

Centisome position: 13.29

GC content: 39.65

Gene sequence:

>1029_bases
ATGAATGAACAAAACCTAAGGACTTTGAGAAAACTGGTTACACCCTATGAAAAGTCCGATTTACAAAAAAGTATATGTCA
AATCATTAACACATTGGTGCCATTTTTCCTGCTATGGTATTTGGCATATAAGAGCTTGTCCATTTCTTATTTCCTTACAT
TAGCCATTTCTGTCGTTGCAGCAGGTTTTTTAGTAAGAACCTTCATCATCTTTCATGATTGCTGCCACTATTCCTTTTTT
AAGAACCGAAAGGCGAATCGAATCCTTGGAACAATTACAGGAATTCTGACTCTGCATCCGTTTGATCATTGGGCACACGA
TCATTCTGTCCATCATGCGACAAGCAGCAACCTGGACAAACGCGGTACGGGCGATATTTGGGTACTGACTGTTGAGGAAT
ATAAAGAAGCCTCAACTAAGACAAAAATAATGTACCGTTTGTACAGAAATCCGTTTGTTATGTTTATTATCGGACCGATT
TACGTCTTCGGGATTACCAATCGTTTTAATCGTAAAGGGGCAAAACGCAAAGAACGGATGAATACATATGTAACGAACCT
GGGGATCGTCGCTTTGGCAGCACTTTTATGTTGGGCTATCGGCTGGCAAACCTTTCTGCTGGTCCAGACGCCAATTTTTA
TGATATCGGGATCCCTTGGAATTTGGATGTTTTATATTCAGCATACGTTTGAGGATTCATATTTCGAAGAAGATGAGCAT
TGGGAATATGTAAAAGCAGCCGTTGAAGGAAGCTCTTTTTATAAGCTTCCAAAAGTCATGCAATGGTTAACAGGCAATAT
CGGTTTCCATCATGTTCATCATTTAAGCCCAAGAGTCCCAAACTATAAGCTTGAAATCGTGCATAACAACACTGAACCAT
TGCAAAACGTTCCGACCATCACACTGGCAACAAGTATTAAGTCGTTAAAGTTCCGCCTATGGGATGAAGAAGGCAAAAAA
TTTGTTGGTTTTACCCACTTAAAAAAAACTTCTAAAAGCCAGGTATCAGCTCGGGTAAGAACGGATTAA

Upstream 100 bases:

>100_bases
GGGGAAGATACTTATCATCTATGGTGTATGACGCTGTGACTTCAAAGACAAACGTTTTCGATACATAGAAGAACATCAGG
GAAGGGGAAATTTTTATAAA

Downstream 100 bases:

>100_bases
ATAAACGCCCATAATCGATGATAATGGGCAGTGTATCTTGCAGAATAAAAGTGCAGACTCGCGCAAAGATTTTGTGCAGA
GGTCAGCACTTTTTTAATGC

Product: putitative fatty acid desaturase

Products: NA

Alternate protein names: Delta(5) acyl-lipid desaturase; Delta(5) desaturase [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MNEQNLRTLRKLVTPYEKSDLQKSICQIINTLVPFFLLWYLAYKSLSISYFLTLAISVVAAGFLVRTFIIFHDCCHYSFF
KNRKANRILGTITGILTLHPFDHWAHDHSVHHATSSNLDKRGTGDIWVLTVEEYKEASTKTKIMYRLYRNPFVMFIIGPI
YVFGITNRFNRKGAKRKERMNTYVTNLGIVALAALLCWAIGWQTFLLVQTPIFMISGSLGIWMFYIQHTFEDSYFEEDEH
WEYVKAAVEGSSFYKLPKVMQWLTGNIGFHHVHHLSPRVPNYKLEIVHNNTEPLQNVPTITLATSIKSLKFRLWDEEGKK
FVGFTHLKKTSKSQVSARVRTD

Sequences:

>Translated_342_residues
MNEQNLRTLRKLVTPYEKSDLQKSICQIINTLVPFFLLWYLAYKSLSISYFLTLAISVVAAGFLVRTFIIFHDCCHYSFF
KNRKANRILGTITGILTLHPFDHWAHDHSVHHATSSNLDKRGTGDIWVLTVEEYKEASTKTKIMYRLYRNPFVMFIIGPI
YVFGITNRFNRKGAKRKERMNTYVTNLGIVALAALLCWAIGWQTFLLVQTPIFMISGSLGIWMFYIQHTFEDSYFEEDEH
WEYVKAAVEGSSFYKLPKVMQWLTGNIGFHHVHHLSPRVPNYKLEIVHNNTEPLQNVPTITLATSIKSLKFRLWDEEGKK
FVGFTHLKKTSKSQVSARVRTD
>Mature_342_residues
MNEQNLRTLRKLVTPYEKSDLQKSICQIINTLVPFFLLWYLAYKSLSISYFLTLAISVVAAGFLVRTFIIFHDCCHYSFF
KNRKANRILGTITGILTLHPFDHWAHDHSVHHATSSNLDKRGTGDIWVLTVEEYKEASTKTKIMYRLYRNPFVMFIIGPI
YVFGITNRFNRKGAKRKERMNTYVTNLGIVALAALLCWAIGWQTFLLVQTPIFMISGSLGIWMFYIQHTFEDSYFEEDEH
WEYVKAAVEGSSFYKLPKVMQWLTGNIGFHHVHHLSPRVPNYKLEIVHNNTEPLQNVPTITLATSIKSLKFRLWDEEGKK
FVGFTHLKKTSKSQVSARVRTD

Specific function: Catalyzes the introduction of a cis-double bond at the delta(5) position of existing saturated fatty acids attached to membrane phospholipids. It is not strictly specific for palmitic acid (C16) but can also accept C14 as well as C18 species to yield unsa

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: 1.14.99.-

Molecular weight: Translated: 39785; Mature: 39785

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEQNLRTLRKLVTPYEKSDLQKSICQIINTLVPFFLLWYLAYKSLSISYFLTLAISVVA
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGFLVRTFIIFHDCCHYSFFKNRKANRILGTITGILTLHPFDHWAHDHSVHHATSSNLDK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCHHHCCCCCCCCCCCCCCCC
RGTGDIWVLTVEEYKEASTKTKIMYRLYRNPFVMFIIGPIYVFGITNRFNRKGAKRKERM
CCCCCEEEEEHHHHHCCHHHHHHHHHHHCCCEEEEEEHHHHHHHCCHHHHCCCHHHHHHH
NTYVTNLGIVALAALLCWAIGWQTFLLVQTPIFMISGSLGIWMFYIQHTFEDSYFEEDEH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHCCCCCCCCHH
WEYVKAAVEGSSFYKLPKVMQWLTGNIGFHHVHHLSPRVPNYKLEIVHNNTEPLQNVPTI
HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEECCCCCHHHCCCE
TLATSIKSLKFRLWDEEGKKFVGFTHLKKTSKSQVSARVRTD
EEEHHHHHHHHEEECCCCCEEECHHHHHHCCHHHHHEECCCC
>Mature Secondary Structure
MNEQNLRTLRKLVTPYEKSDLQKSICQIINTLVPFFLLWYLAYKSLSISYFLTLAISVVA
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGFLVRTFIIFHDCCHYSFFKNRKANRILGTITGILTLHPFDHWAHDHSVHHATSSNLDK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCHHHCCCCCCCCCCCCCCCC
RGTGDIWVLTVEEYKEASTKTKIMYRLYRNPFVMFIIGPIYVFGITNRFNRKGAKRKERM
CCCCCEEEEEHHHHHCCHHHHHHHHHHHCCCEEEEEEHHHHHHHCCHHHHCCCHHHHHHH
NTYVTNLGIVALAALLCWAIGWQTFLLVQTPIFMISGSLGIWMFYIQHTFEDSYFEEDEH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHCCCCCCCCHH
WEYVKAAVEGSSFYKLPKVMQWLTGNIGFHHVHHLSPRVPNYKLEIVHNNTEPLQNVPTI
HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEECCCCCHHHCCCE
TLATSIKSLKFRLWDEEGKKFVGFTHLKKTSKSQVSARVRTD
EEEHHHHHHHHEEECCCCCEEECHHHHHHCCHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9555904; 9384377 [H]