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The map label for this gene is ydeB [H]

Identifier: 154685003

GI number: 154685003

Start: 522288

End: 522749

Strand: Reverse

Name: ydeB [H]

Synonym: RBAM_005410

Alternate gene names: 154685003

Gene position: 522749-522288 (Counterclockwise)

Preceding gene: 154685012

Following gene: 154685000

Centisome position: 13.34

GC content: 32.47

Gene sequence:

>462_bases
ATGTTTCAAATTGGCGATAACATTGTTTATCCAATGCACGGAGCAGGTACAATTGAAGCCATAGAAGAAAAACAATTCTT
AGAGGAAAAACAACAGTATTATGTCATAAGAATGTCAATCAGTAATATGACAGTTATGATTCCAACGCGTAAAATATTGA
GTTCAAATATACGGCCAGTTACTGATATACGTGCATTAAAACACATTATACACATTTTTCAGCATGGAGAATCAGATAAG
TTACTGCCGTGGAAGCAAAGGTATATAGTAAACACGAACAAAATAAAAACGGGTGAAATACAAGAAGGCGCTGAAGTTGT
ACGTGATTTAATGCGAATGAAGAAAGAAAAAGCACTTAATTCAAGCGAAAAAAAAATGTTGGATAATGCATATGAATTTT
TGATTAGTGAACTGGAAGTCATTAAAGGAATCACTGAAAAACAAATAAAAAGTTTCTGCTAA

Upstream 100 bases:

>100_bases
TATTGACACCAATAAATGACCATGTTATCATTAAAAATTTGATATCTCACTCCATATATGGTAACCTTAAGTTAAGTTCC
CATATATGGAGGTGGATTAT

Downstream 100 bases:

>100_bases
GGTTAATTTTAAATAATGTTTTGCATTCCAAAAAGCACCCGCAAGTTTTCGGAATATTACGATTAAAATATTTCAAAGAC
GCTTAACTTCATCAACTTAC

Product: YdeB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MFQIGDNIVYPMHGAGTIEAIEEKQFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRPVTDIRALKHIIHIFQHGESDK
LLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKALNSSEKKMLDNAYEFLISELEVIKGITEKQIKSFC

Sequences:

>Translated_153_residues
MFQIGDNIVYPMHGAGTIEAIEEKQFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRPVTDIRALKHIIHIFQHGESDK
LLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKALNSSEKKMLDNAYEFLISELEVIKGITEKQIKSFC
>Mature_153_residues
MFQIGDNIVYPMHGAGTIEAIEEKQFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRPVTDIRALKHIIHIFQHGESDK
LLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKALNSSEKKMLDNAYEFLISELEVIKGITEKQIKSFC

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 17831; Mature: 17831

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQIGDNIVYPMHGAGTIEAIEEKQFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRPV
CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEECCEEEEEECHHHHHCCCCCH
TDIRALKHIIHIFQHGESDKLLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKALN
HHHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
SSEKKMLDNAYEFLISELEVIKGITEKQIKSFC
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MFQIGDNIVYPMHGAGTIEAIEEKQFLEEKQQYYVIRMSISNMTVMIPTRKILSSNIRPV
CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHEEEEEEEECCEEEEEECHHHHHCCCCCH
TDIRALKHIIHIFQHGESDKLLPWKQRYIVNTNKIKTGEIQEGAEVVRDLMRMKKEKALN
HHHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
SSEKKMLDNAYEFLISELEVIKGITEKQIKSFC
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]