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The map label for this gene is ydcA [H]

Identifier: 154684964

GI number: 154684964

Start: 489375

End: 489974

Strand: Reverse

Name: ydcA [H]

Synonym: RBAM_004950

Alternate gene names: 154684964

Gene position: 489974-489375 (Counterclockwise)

Preceding gene: 154684979

Following gene: 154684958

Centisome position: 12.5

GC content: 48.17

Gene sequence:

>600_bases
ATGTTTATACGAACGGAAAATTTCCAGACTTTTATCAGACGTTATCCGGCCGTCAGCTGTATCTTGGCGCTGCAGGCGTT
CTTGTGGCTGTTTTTCAGTATGCCGCTTCATTCCGTCATGATGTGGTCAGATGCTGTGACCGGCTATAATTACGGCGTTT
CCTCGGGAGAATGGTGGCGGCTGGTGACACCGATGTTTTTACACGCGAATTTCACTCACCTTTTGTTTAACTCCATGTCT
CTCTTTTTATTCGCGCCCCCGCTTGAGCAGATGCTCGGAAAAGTCCGTTTTCTGATTGTGTACATCGCATCGGGCATCAT
CGGCAATATCGGCACGTATCTTGCCGAACCGCTTGATTATGTGCATGTCGGCGCATCCGGCGCGATCTTCGGACTTTTCG
GCGTGTATGTGTTTTTGACTGTTTTCCGCAAGGAGCTGATCGGCCGGGATCAGTCGAAAATGATTATGACCCTGCTTATC
ATCGCGGTGCTGTCGACGTTTATCAACTCTAATATTAACATTATGGCGCATTTGTTCGGACTGGCAGGCGGATTTTTGCT
TTCCTTTTTATGCGTGCAGCAAAAAAAGCGGCGGTATTAA

Upstream 100 bases:

>100_bases
AAAATCATGTGAATTCCTCCTAAAAGTCCGTACTAAAAAACGGTTTATGTCATAAACGTGTTACTATATATGTAACAAAT
CAGATGCAAAGGGGCTTGCG

Downstream 100 bases:

>100_bases
CCGTCCGCTTTTTCATATGAATACCAGCGCCCGATGCGTTCGGCATCTTCCTCGCTGACATCCTTCAGCATGACATGCTC
CATGTGGTGAGCTGATTTCA

Product: YdcA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MFIRTENFQTFIRRYPAVSCILALQAFLWLFFSMPLHSVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMS
LFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLI
IAVLSTFINSNINIMAHLFGLAGGFLLSFLCVQQKKRRY

Sequences:

>Translated_199_residues
MFIRTENFQTFIRRYPAVSCILALQAFLWLFFSMPLHSVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMS
LFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLI
IAVLSTFINSNINIMAHLFGLAGGFLLSFLCVQQKKRRY
>Mature_199_residues
MFIRTENFQTFIRRYPAVSCILALQAFLWLFFSMPLHSVMMWSDAVTGYNYGVSSGEWWRLVTPMFLHANFTHLLFNSMS
LFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEPLDYVHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLI
IAVLSTFINSNINIMAHLFGLAGGFLLSFLCVQQKKRRY

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002610
- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 22680; Mature: 22680

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIRTENFQTFIRRYPAVSCILALQAFLWLFFSMPLHSVMMWSDAVTGYNYGVSSGEWWR
CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEPLDY
HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
VHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLIIAVLSTFINSNINIMAHLFG
HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LAGGFLLSFLCVQQKKRRY
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFIRTENFQTFIRRYPAVSCILALQAFLWLFFSMPLHSVMMWSDAVTGYNYGVSSGEWWR
CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEPLDY
HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
VHVGASGAIFGLFGVYVFLTVFRKELIGRDQSKMIMTLLIIAVLSTFINSNINIMAHLFG
HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LAGGFLLSFLCVQQKKRRY
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]