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The map label for this gene is ydbP [H]

Identifier: 154684958

GI number: 154684958

Start: 482508

End: 482825

Strand: Reverse

Name: ydbP [H]

Synonym: RBAM_004890

Alternate gene names: 154684958

Gene position: 482825-482508 (Counterclockwise)

Preceding gene: 154684964

Following gene: 154684955

Centisome position: 12.32

GC content: 40.57

Gene sequence:

>318_bases
ATGAAAAAAATCAGTACAACAGAACAATTTAATGAACTTATTCAATCCGACAAGGAAATCATCGTGAAATTTTTCGCTGA
CTGGTGCCCTGACTGCACGCGCATGAATATGTTCATCGGCGATATTTTGGAAGAATATAATCAAAATGATTGGTATGAAC
TGAACAGAGACGAGCTCCCTGAGCTTGCCGACAAATATCAGGTAATGGGCATACCGAGCCTTCTGATCTTTAAAAACGGC
GAAAAGAAAGCGCATCTTCACAGCGCAAACGCGAAAACGCCCGAAGAAGTCACAGAGTTTTTATCACAGCATATTTAA

Upstream 100 bases:

>100_bases
AAATGATCTAATTATTTTTGGGCATTCTGAATATGAAAGCATTTGTATGTAATTCCTTTTTATTTTATATTAAAATGGCA
TGGAAAAGGAGATGTGTCAT

Downstream 100 bases:

>100_bases
TTCGTTTCACGATCTTTGTTTATGACTTCAGGCTCTACATGAACATGGACATGAGTCACATCATGTTCATGTTTTATTGC
ATATTCGACCTCATCGGCTA

Product: YdbP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MKKISTTEQFNELIQSDKEIIVKFFADWCPDCTRMNMFIGDILEEYNQNDWYELNRDELPELADKYQVMGIPSLLIFKNG
EKKAHLHSANAKTPEEVTEFLSQHI

Sequences:

>Translated_105_residues
MKKISTTEQFNELIQSDKEIIVKFFADWCPDCTRMNMFIGDILEEYNQNDWYELNRDELPELADKYQVMGIPSLLIFKNG
EKKAHLHSANAKTPEEVTEFLSQHI
>Mature_105_residues
MKKISTTEQFNELIQSDKEIIVKFFADWCPDCTRMNMFIGDILEEYNQNDWYELNRDELPELADKYQVMGIPSLLIFKNG
EKKAHLHSANAKTPEEVTEFLSQHI

Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI95113651, Length=101, Percent_Identity=30.6930693069307, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082331, Length=102, Percent_Identity=35.2941176470588, Blast_Score=63, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6323072, Length=85, Percent_Identity=40, Blast_Score=75, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321648, Length=101, Percent_Identity=28.7128712871287, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 12356; Mature: 12356

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKISTTEQFNELIQSDKEIIVKFFADWCPDCTRMNMFIGDILEEYNQNDWYELNRDELP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEECCHHHHH
ELADKYQVMGIPSLLIFKNGEKKAHLHSANAKTPEEVTEFLSQHI
HHHHHHHHCCCCEEEEEECCCCCHHCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKKISTTEQFNELIQSDKEIIVKFFADWCPDCTRMNMFIGDILEEYNQNDWYELNRDELP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEECCHHHHH
ELADKYQVMGIPSLLIFKNGEKKAHLHSANAKTPEEVTEFLSQHI
HHHHHHHHCCCCEEEEEECCCCCHHCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]