Click here to switch to the map view.

The map label for this gene is ycnK [H]

Identifier: 154684890

GI number: 154684890

Start: 419725

End: 420297

Strand: Reverse

Name: ycnK [H]

Synonym: RBAM_004210

Alternate gene names: 154684890

Gene position: 420297-419725 (Counterclockwise)

Preceding gene: 154684905

Following gene: 154684889

Centisome position: 10.73

GC content: 51.31

Gene sequence:

>573_bases
TTGCTTCCGATTCACAGACAGCAAACCTTGCTTGAATGGCTGAAAGAAGAGGGCGCGCTGAAAATCTCTGACATAAGCGA
GAGATTCGGCGTCTCCGAGATGACCGTGTACAGAGACGTCAATCAGCTGGCGGATGCAAACCGGATTATCCGGACACCCG
GCGGCATTACCCTCCCTCCCGCTTCAGAACGAAGCGCCAATCAATGCGGCTATTGCCTGCGGCCGATTCAGCATTCGTAT
TCTGTTCAGCTTATTACCGTTTCACAAGCCGTTGAGCAGATGTGCTGCATTCATTGCGCGATTTTGCGGTATGAGGATAA
AAAGGAAGAAGTGTCCCACGTCATTTGTAAAGATTTTCTTCTCCAGACGACGCTGACGGCCGCTTCCGCATACTTTTTAG
TCCATGCCGATATTGACCTTCAATGCTGCCGGCCTCAGGCGATTCCCTTCTCAACGCTTGATTACGCAGAACGGTTTCAA
AAAGGATTCGGCGGGGTCATTTGCACCTTTGACGAGGCGGCGGACATCATCTTACACGACAGGCAGAAGGGATGCACCTG
CAGCAAGACATAA

Upstream 100 bases:

>100_bases
CACATATTTTATCATCAGGCTCTTGTGTGCATTTGTGAAAACATCTACTCTTAGAGGGAGGTTCATCACTCATTCGCATC
ATAAAAAGGAGGATGCAGAA

Downstream 100 bases:

>100_bases
CAACAACCAACCGGAAGGCGGTGTCATCATCCATGAGACAGAACAAACGCTGGCTCATCTTTTTGCTGTTCCTTGTTTTG
ATTCCGAAAACAAGCTTCGC

Product: YcnK

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLPIHRQQTLLEWLKEEGALKISDISERFGVSEMTVYRDVNQLADANRIIRTPGGITLPPASERSANQCGYCLRPIQHSY
SVQLITVSQAVEQMCCIHCAILRYEDKKEEVSHVICKDFLLQTTLTAASAYFLVHADIDLQCCRPQAIPFSTLDYAERFQ
KGFGGVICTFDEAADIILHDRQKGCTCSKT

Sequences:

>Translated_190_residues
MLPIHRQQTLLEWLKEEGALKISDISERFGVSEMTVYRDVNQLADANRIIRTPGGITLPPASERSANQCGYCLRPIQHSY
SVQLITVSQAVEQMCCIHCAILRYEDKKEEVSHVICKDFLLQTTLTAASAYFLVHADIDLQCCRPQAIPFSTLDYAERFQ
KGFGGVICTFDEAADIILHDRQKGCTCSKT
>Mature_190_residues
MLPIHRQQTLLEWLKEEGALKISDISERFGVSEMTVYRDVNQLADANRIIRTPGGITLPPASERSANQCGYCLRPIQHSY
SVQLITVSQAVEQMCCIHCAILRYEDKKEEVSHVICKDFLLQTTLTAASAYFLVHADIDLQCCRPQAIPFSTLDYAERFQ
KGFGGVICTFDEAADIILHDRQKGCTCSKT

Specific function: May act as a negative transcriptional regulator of ycnJ in the presence of copper. May use copper as a corepressor [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001034
- InterPro:   IPR008719
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08220 HTH_DeoR; PF05573 NosL [H]

EC number: NA

Molecular weight: Translated: 21375; Mature: 21375

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
5.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPIHRQQTLLEWLKEEGALKISDISERFGVSEMTVYRDVNQLADANRIIRTPGGITLPP
CCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCEECCC
ASERSANQCGYCLRPIQHSYSVQLITVSQAVEQMCCIHCAILRYEDKKEEVSHVICKDFL
CCCCCCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LQTTLTAASAYFLVHADIDLQCCRPQAIPFSTLDYAERFQKGFGGVICTFDEAADIILHD
HHHHHHHHHEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHEEEC
RQKGCTCSKT
CCCCCCCCCC
>Mature Secondary Structure
MLPIHRQQTLLEWLKEEGALKISDISERFGVSEMTVYRDVNQLADANRIIRTPGGITLPP
CCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCEECCC
ASERSANQCGYCLRPIQHSYSVQLITVSQAVEQMCCIHCAILRYEDKKEEVSHVICKDFL
CCCCCCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LQTTLTAASAYFLVHADIDLQCCRPQAIPFSTLDYAERFQKGFGGVICTFDEAADIILHD
HHHHHHHHHEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHEEEC
RQKGCTCSKT
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]