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The map label for this gene is ycnJ [H]

Identifier: 154684889

GI number: 154684889

Start: 418064

End: 419692

Strand: Reverse

Name: ycnJ [H]

Synonym: RBAM_004200

Alternate gene names: 154684889

Gene position: 419692-418064 (Counterclockwise)

Preceding gene: 154684890

Following gene: 154684888

Centisome position: 10.71

GC content: 49.97

Gene sequence:

>1629_bases
ATGAGACAGAACAAACGCTGGCTCATCTTTTTGCTGTTCCTTGTTTTGATTCCGAAAACAAGCTTCGCCCACGCCTACAT
CACAAACTCAAATCCGGGTGAGAACAGCGAATTAAAACAAGCGCCGAAGCAGATTGAAATTGAGTTTAATGAACAGATTG
AAGAAGGCTTCCACTCCATTAAGGTCTATAATTCATCCGGCGAACGGGTCGACGCGGGCAAAACGGTGATTCAAAAAAAT
GATGCCCGCATCATGACCGCGGCATTGAAAAAAAATCTGCCGCATGATATTTACAGAGCGGAATGGAACGCGGTATCGGC
CGACGGACATCCGGTATCCGGCGTCATCCCTTTCAGTGTCGGAAAAGCCGGCGGAGAACTTCAGGAGCAGACATCATCGC
AAGCGGCGCTTCATCCCGAAGCGGCCATCGACCGCGGTATTTTGTACACCGCTCTCTCCCTGTTTATCGGCACGGCTTTT
TTCCATCTGTTTTGGTACAGAAATAATAAAGATTCATCAAAAGCAAAACGAACTGTAAAGCTGCTCGTGATTTCTTTATG
TGTAACGGGGCTCGCGCTTATCTGCCAGCTCCCGATCCAGACGAAAGAAAACGCGGGCGGCGCTTGGAGCGCCGCGTTCC
AGCCGGACTATGTAAAAGAAACGCTTCTGAAAACGGCAGGCGGGTACGTCTGGATGATCCAGACCAGCTTATTTATCCTG
CTCGCCCTGTCCATGATCCCGCTGTTGAAGAAGAAAGCATTCCGGTCATTTGCGTACTGGACGGCGCCGCTGTTGTTCTT
CTTCGCTTCGCTTTTGGCAAAAGCATTCGCCGGGCATGCGGCGGTCATTGACGAAAAAGCGGTCGGCATCGCGATGGACT
TTCTCCATTTATCGGCCGCGTCTGTATGGATGGGCGGTATCGCCGCGCTTGTGCTGCTTCTTTCATCAGAGTGGAGAAAA
ACCGATAAAACCATCGCTTGGGAAACGGTCAGACGGTTTTCTCCTTGGGCGTTCGCCTCTGTCGGTGTGCTGTTATTTTC
AGGTGTGCTGAACGGATTTTTCATTATCCGCACGTTTGATTCACTCTTTCACACCGCTTACGGTAAGACGCTCCTTTTGA
AAATCGGACTGTTTGTCATCATGCTTGTGCTCGGCGCCGTTCACGTATGGATAACGAAGTTCAGCAGAAAAAGGAGCATC
AGCGCAACGATAAAGGCCGAATGGGCACTAGGCATCGCGGTGTTATTTACAACCGCCGTCTTCACAAGCCTGCCCAGCCC
GCCGCCGCCTGCGCCATTGCCTTTTAACGGCTCAGAAACGATCGGAAACGGGGAAACCCTGTCCTTGCACATTACGCCGA
ACCAGCCGGGTAAAAATGAATTTCAAGTCATTGTCACCGATCACAACGGCAGCTTGGTAAAAGACATTCAGCAATTTACG
GTCACTGTTTACCAGACGGGCTTCAGCGGCAAACAGCATGAAAGCACCTTTGATTTGAAGAAGACGAAGGAAGGCACATT
TGAAGCCGCCAACCTGTCCATCACCGAAAAGGGAAACTGGAAGATCAAAGTCCACGGGCTGACAAACGATTTTAATGAAA
TCAACCAAATATTCTCAACGACAAACTAA

Upstream 100 bases:

>100_bases
CCTTTGACGAGGCGGCGGACATCATCTTACACGACAGGCAGAAGGGATGCACCTGCAGCAAGACATAACAACAACCAACC
GGAAGGCGGTGTCATCATCC

Downstream 100 bases:

>100_bases
GGAGTGTATCTCATGTTGAAAAAAAAGGCTTTATTATTCATATCCGCCGTGACCCTGTCACTCGTCGGTTTTACGGCGGC
AGCAAGCGCCCACGTCTCAG

Product: YcnJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MRQNKRWLIFLLFLVLIPKTSFAHAYITNSNPGENSELKQAPKQIEIEFNEQIEEGFHSIKVYNSSGERVDAGKTVIQKN
DARIMTAALKKNLPHDIYRAEWNAVSADGHPVSGVIPFSVGKAGGELQEQTSSQAALHPEAAIDRGILYTALSLFIGTAF
FHLFWYRNNKDSSKAKRTVKLLVISLCVTGLALICQLPIQTKENAGGAWSAAFQPDYVKETLLKTAGGYVWMIQTSLFIL
LALSMIPLLKKKAFRSFAYWTAPLLFFFASLLAKAFAGHAAVIDEKAVGIAMDFLHLSAASVWMGGIAALVLLLSSEWRK
TDKTIAWETVRRFSPWAFASVGVLLFSGVLNGFFIIRTFDSLFHTAYGKTLLLKIGLFVIMLVLGAVHVWITKFSRKRSI
SATIKAEWALGIAVLFTTAVFTSLPSPPPPAPLPFNGSETIGNGETLSLHITPNQPGKNEFQVIVTDHNGSLVKDIQQFT
VTVYQTGFSGKQHESTFDLKKTKEGTFEAANLSITEKGNWKIKVHGLTNDFNEINQIFSTTN

Sequences:

>Translated_542_residues
MRQNKRWLIFLLFLVLIPKTSFAHAYITNSNPGENSELKQAPKQIEIEFNEQIEEGFHSIKVYNSSGERVDAGKTVIQKN
DARIMTAALKKNLPHDIYRAEWNAVSADGHPVSGVIPFSVGKAGGELQEQTSSQAALHPEAAIDRGILYTALSLFIGTAF
FHLFWYRNNKDSSKAKRTVKLLVISLCVTGLALICQLPIQTKENAGGAWSAAFQPDYVKETLLKTAGGYVWMIQTSLFIL
LALSMIPLLKKKAFRSFAYWTAPLLFFFASLLAKAFAGHAAVIDEKAVGIAMDFLHLSAASVWMGGIAALVLLLSSEWRK
TDKTIAWETVRRFSPWAFASVGVLLFSGVLNGFFIIRTFDSLFHTAYGKTLLLKIGLFVIMLVLGAVHVWITKFSRKRSI
SATIKAEWALGIAVLFTTAVFTSLPSPPPPAPLPFNGSETIGNGETLSLHITPNQPGKNEFQVIVTDHNGSLVKDIQQFT
VTVYQTGFSGKQHESTFDLKKTKEGTFEAANLSITEKGNWKIKVHGLTNDFNEINQIFSTTN
>Mature_542_residues
MRQNKRWLIFLLFLVLIPKTSFAHAYITNSNPGENSELKQAPKQIEIEFNEQIEEGFHSIKVYNSSGERVDAGKTVIQKN
DARIMTAALKKNLPHDIYRAEWNAVSADGHPVSGVIPFSVGKAGGELQEQTSSQAALHPEAAIDRGILYTALSLFIGTAF
FHLFWYRNNKDSSKAKRTVKLLVISLCVTGLALICQLPIQTKENAGGAWSAAFQPDYVKETLLKTAGGYVWMIQTSLFIL
LALSMIPLLKKKAFRSFAYWTAPLLFFFASLLAKAFAGHAAVIDEKAVGIAMDFLHLSAASVWMGGIAALVLLLSSEWRK
TDKTIAWETVRRFSPWAFASVGVLLFSGVLNGFFIIRTFDSLFHTAYGKTLLLKIGLFVIMLVLGAVHVWITKFSRKRSI
SATIKAEWALGIAVLFTTAVFTSLPSPPPPAPLPFNGSETIGNGETLSLHITPNQPGKNEFQVIVTDHNGSLVKDIQQFT
VTVYQTGFSGKQHESTFDLKKTKEGTFEAANLSITEKGNWKIKVHGLTNDFNEINQIFSTTN

Specific function: Involved in uptake of extracellular oxidized copper under copper-limiting conditions [H]

COG id: COG1276

COG function: function code P; Putative copper export protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the CopD family [H]

Homologues:

Organism=Escherichia coli, GI1788146, Length=115, Percent_Identity=28.695652173913, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007348
- InterPro:   IPR008457
- InterPro:   IPR014755
- InterPro:   IPR014756 [H]

Pfam domain/function: PF04234 CopC; PF05425 CopD [H]

EC number: NA

Molecular weight: Translated: 59883; Mature: 59883

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQNKRWLIFLLFLVLIPKTSFAHAYITNSNPGENSELKQAPKQIEIEFNEQIEEGFHSI
CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHCCCCEEEEEEHHHHHCCHHEE
KVYNSSGERVDAGKTVIQKNDARIMTAALKKNLPHDIYRAEWNAVSADGHPVSGVIPFSV
EEECCCCCEECCCCHHHCCCCCHHHHHHHHCCCCHHHHHCCCCEECCCCCCCCCEEECCC
GKAGGELQEQTSSQAALHPEAAIDRGILYTALSLFIGTAFFHLFWYRNNKDSSKAKRTVK
CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH
LLVISLCVTGLALICQLPIQTKENAGGAWSAAFQPDYVKETLLKTAGGYVWMIQTSLFIL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCEEEEHHHHHHHH
LALSMIPLLKKKAFRSFAYWTAPLLFFFASLLAKAFAGHAAVIDEKAVGIAMDFLHLSAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCHHHHHHHHHHHHHH
SVWMGGIAALVLLLSSEWRKTDKTIAWETVRRFSPWAFASVGVLLFSGVLNGFFIIRTFD
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEHHHHHH
SLFHTAYGKTLLLKIGLFVIMLVLGAVHVWITKFSRKRSISATIKAEWALGIAVLFTTAV
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHH
FTSLPSPPPPAPLPFNGSETIGNGETLSLHITPNQPGKNEFQVIVTDHNGSLVKDIQQFT
HHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHE
VTVYQTGFSGKQHESTFDLKKTKEGTFEAANLSITEKGNWKIKVHGLTNDFNEINQIFST
EEEEECCCCCCCCCCCCCHHHCCCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHCC
TN
CC
>Mature Secondary Structure
MRQNKRWLIFLLFLVLIPKTSFAHAYITNSNPGENSELKQAPKQIEIEFNEQIEEGFHSI
CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHCCCCEEEEEEHHHHHCCHHEE
KVYNSSGERVDAGKTVIQKNDARIMTAALKKNLPHDIYRAEWNAVSADGHPVSGVIPFSV
EEECCCCCEECCCCHHHCCCCCHHHHHHHHCCCCHHHHHCCCCEECCCCCCCCCEEECCC
GKAGGELQEQTSSQAALHPEAAIDRGILYTALSLFIGTAFFHLFWYRNNKDSSKAKRTVK
CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH
LLVISLCVTGLALICQLPIQTKENAGGAWSAAFQPDYVKETLLKTAGGYVWMIQTSLFIL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCEEEEHHHHHHHH
LALSMIPLLKKKAFRSFAYWTAPLLFFFASLLAKAFAGHAAVIDEKAVGIAMDFLHLSAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCHHHHHHHHHHHHHH
SVWMGGIAALVLLLSSEWRKTDKTIAWETVRRFSPWAFASVGVLLFSGVLNGFFIIRTFD
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEHHHHHH
SLFHTAYGKTLLLKIGLFVIMLVLGAVHVWITKFSRKRSISATIKAEWALGIAVLFTTAV
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHH
FTSLPSPPPPAPLPFNGSETIGNGETLSLHITPNQPGKNEFQVIVTDHNGSLVKDIQQFT
HHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHE
VTVYQTGFSGKQHESTFDLKKTKEGTFEAANLSITEKGNWKIKVHGLTNDFNEINQIFST
EEEEECCCCCCCCCCCCCHHHCCCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHCC
TN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Cu [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]