Click here to switch to the map view.

The map label for this gene is ybgH [H]

Identifier: 154684748

GI number: 154684748

Start: 252291

End: 253727

Strand: Reverse

Name: ybgH [H]

Synonym: RBAM_002790

Alternate gene names: 154684748

Gene position: 253727-252291 (Counterclockwise)

Preceding gene: 154684749

Following gene: 154684747

Centisome position: 6.47

GC content: 49.97

Gene sequence:

>1437_bases
ATGCAGGAATTCCTTGAAAATGTAATCGGCTCGGCAAATGATTTTTTATGGTCAAAACTGTTAATCGTACTGCTTCTTTC
TCTGGGACTGTTTTTTACGTTCAGATCAAAGGGTCTGCAAGTCCGCATGCTGAAGGAAATGATCCGGGTTTTGAAGGAAG
GCGCGGCCGCCCGGACAAAAAACAGCATTTCCCCGTTTCAGGCATTTTGCATCAGTATGGCGGCGCGTGTCGGAACCGGG
AATATTACCGGAATCGCCATTGCGATCGCACTCGGCGGTCCGGGCGCTATTTTCTGGATGTGGATTATCGCAGTCATCGG
TTCGGCTTCAAGCTTTGTTGAAAGCACGCTGGCCCAAATTTATAAAGTAAAAGATCAAAACGGATTCCGCGGGGGCCCGG
CCTATTACATGGAAAAGGGCCTGAAGAAACGCTGGATGGGCGCGCTGTTCGCCGTATTAATCACACTGTCATTCGGGGTT
GTTTTTAATTCCGTTCAATCCAATACAATCAGCGTCGCCTTTCAAAACGCATTCGGCACCAGCCGGCTTACATTGGGCAT
TATTTTAATCGTGGTTTTCGGCGGCGTAATCTTCGGCGGCGTCAAACGAATTGCGAAAATGGCGGAATACATCGTAGTCG
TCTTGGCCGTTTTATATATCGGTGTCGCTTTCTTTGTCATTCTGACGAACATCACCCAATTGCCCGGCGTTCTGTCGCTA
ATCGTAAAAAATGCGTTCGGCATTGATCAGGCAGCGGGCGGCGCTTTAGGTGCGGCCTTGATGCAAGGTGTAAGACGCGG
GATTTTCTCAAATGAAGCGGGTATGGGAAGCGCTCCGAACGCGGCGGCGACAGCTACAACGAGCCACCCGGTGAAACAGG
GGCTCATTCAGGCATTCGGCGTCCTGACGGATACGCTCGTCATTTGTACAAGCACGGCGCTTATCATTTTATTTTCAGAC
GCGTATCACCAGCCGGGACTGAGCGGCATCGCGCTTTCTCAGGCCGCCTTGAGCGATCATGTCGGCGCATGGGCTTCAGG
TTTCCTTGCCGTCTTAATGCTTTTGTTCGGCTTCAGCGCTCTGATGGGCAACTATTATTACGGAGAAACCAATATCGGAT
TTTTAAGCCAGAACAAAAAATGGCTGTTCATTTACCGCATCTGCGTGCTCGGAATGGTACTGTTCGGCTGTATTTCCAAA
GTCCAGCTTGTGTGGGATATGGCTGACTTGTTCATGGGCTTAATGGTGGTCGTGAACTTAATCGCGATTTTCCTTCTGTC
GAAAAAAGCGTTTGCCGCTTTGAGCGATTATGCCCGGCAAAAGAAAGCCGGAAAGGACCCCGTCTTTTACAGAGATGTGC
TCCCTGATGATGACGGGATCGACTGCTGGGAGTATTCAGACATCGCGAAAAGTGCGAAAGGCAAACACATTTCCTAA

Upstream 100 bases:

>100_bases
TGAATACGGCAACAGCCTGACCGGCGGCATGCTGCTGAAACATATCGCACAGGAGTGGGAGCTCAGTATTTTTTAATCAA
ACGAACCAAGAGGTGATTGG

Downstream 100 bases:

>100_bases
ACAAAAGGTGTTCGGGCAGCGTCCTGAACACCTTTTTTCTGCCGGTTCATTGACAAAGAGAATAGCATCCATTACCCTTT
TTATATATTTTCAGTAAAGT

Product: YbgH

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MQEFLENVIGSANDFLWSKLLIVLLLSLGLFFTFRSKGLQVRMLKEMIRVLKEGAAARTKNSISPFQAFCISMAARVGTG
NITGIAIAIALGGPGAIFWMWIIAVIGSASSFVESTLAQIYKVKDQNGFRGGPAYYMEKGLKKRWMGALFAVLITLSFGV
VFNSVQSNTISVAFQNAFGTSRLTLGIILIVVFGGVIFGGVKRIAKMAEYIVVVLAVLYIGVAFFVILTNITQLPGVLSL
IVKNAFGIDQAAGGALGAALMQGVRRGIFSNEAGMGSAPNAAATATTSHPVKQGLIQAFGVLTDTLVICTSTALIILFSD
AYHQPGLSGIALSQAALSDHVGAWASGFLAVLMLLFGFSALMGNYYYGETNIGFLSQNKKWLFIYRICVLGMVLFGCISK
VQLVWDMADLFMGLMVVVNLIAIFLLSKKAFAALSDYARQKKAGKDPVFYRDVLPDDDGIDCWEYSDIAKSAKGKHIS

Sequences:

>Translated_478_residues
MQEFLENVIGSANDFLWSKLLIVLLLSLGLFFTFRSKGLQVRMLKEMIRVLKEGAAARTKNSISPFQAFCISMAARVGTG
NITGIAIAIALGGPGAIFWMWIIAVIGSASSFVESTLAQIYKVKDQNGFRGGPAYYMEKGLKKRWMGALFAVLITLSFGV
VFNSVQSNTISVAFQNAFGTSRLTLGIILIVVFGGVIFGGVKRIAKMAEYIVVVLAVLYIGVAFFVILTNITQLPGVLSL
IVKNAFGIDQAAGGALGAALMQGVRRGIFSNEAGMGSAPNAAATATTSHPVKQGLIQAFGVLTDTLVICTSTALIILFSD
AYHQPGLSGIALSQAALSDHVGAWASGFLAVLMLLFGFSALMGNYYYGETNIGFLSQNKKWLFIYRICVLGMVLFGCISK
VQLVWDMADLFMGLMVVVNLIAIFLLSKKAFAALSDYARQKKAGKDPVFYRDVLPDDDGIDCWEYSDIAKSAKGKHIS
>Mature_478_residues
MQEFLENVIGSANDFLWSKLLIVLLLSLGLFFTFRSKGLQVRMLKEMIRVLKEGAAARTKNSISPFQAFCISMAARVGTG
NITGIAIAIALGGPGAIFWMWIIAVIGSASSFVESTLAQIYKVKDQNGFRGGPAYYMEKGLKKRWMGALFAVLITLSFGV
VFNSVQSNTISVAFQNAFGTSRLTLGIILIVVFGGVIFGGVKRIAKMAEYIVVVLAVLYIGVAFFVILTNITQLPGVLSL
IVKNAFGIDQAAGGALGAALMQGVRRGIFSNEAGMGSAPNAAATATTSHPVKQGLIQAFGVLTDTLVICTSTALIILFSD
AYHQPGLSGIALSQAALSDHVGAWASGFLAVLMLLFGFSALMGNYYYGETNIGFLSQNKKWLFIYRICVLGMVLFGCISK
VQLVWDMADLFMGLMVVVNLIAIFLLSKKAFAALSDYARQKKAGKDPVFYRDVLPDDDGIDCWEYSDIAKSAKGKHIS

Specific function: Probably functions as a sodium/glutamine symporter for glutamine uptake [H]

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=472, Percent_Identity=41.1016949152542, Blast_Score=337, Evalue=1e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 51395; Mature: 51395

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEFLENVIGSANDFLWSKLLIVLLLSLGLFFTFRSKGLQVRMLKEMIRVLKEGAAARTK
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCC
NSISPFQAFCISMAARVGTGNITGIAIAIALGGPGAIFWMWIIAVIGSASSFVESTLAQI
CCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHH
YKVKDQNGFRGGPAYYMEKGLKKRWMGALFAVLITLSFGVVFNSVQSNTISVAFQNAFGT
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
SRLTLGIILIVVFGGVIFGGVKRIAKMAEYIVVVLAVLYIGVAFFVILTNITQLPGVLSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVKNAFGIDQAAGGALGAALMQGVRRGIFSNEAGMGSAPNAAATATTSHPVKQGLIQAFG
HHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VLTDTLVICTSTALIILFSDAYHQPGLSGIALSQAALSDHVGAWASGFLAVLMLLFGFSA
HHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMGNYYYGETNIGFLSQNKKWLFIYRICVLGMVLFGCISKVQLVWDMADLFMGLMVVVNL
HHCCCEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAIFLLSKKAFAALSDYARQKKAGKDPVFYRDVLPDDDGIDCWEYSDIAKSAKGKHIS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MQEFLENVIGSANDFLWSKLLIVLLLSLGLFFTFRSKGLQVRMLKEMIRVLKEGAAARTK
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCC
NSISPFQAFCISMAARVGTGNITGIAIAIALGGPGAIFWMWIIAVIGSASSFVESTLAQI
CCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHH
YKVKDQNGFRGGPAYYMEKGLKKRWMGALFAVLITLSFGVVFNSVQSNTISVAFQNAFGT
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
SRLTLGIILIVVFGGVIFGGVKRIAKMAEYIVVVLAVLYIGVAFFVILTNITQLPGVLSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVKNAFGIDQAAGGALGAALMQGVRRGIFSNEAGMGSAPNAAATATTSHPVKQGLIQAFG
HHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VLTDTLVICTSTALIILFSDAYHQPGLSGIALSQAALSDHVGAWASGFLAVLMLLFGFSA
HHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMGNYYYGETNIGFLSQNKKWLFIYRICVLGMVLFGCISKVQLVWDMADLFMGLMVVVNL
HHCCCEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAIFLLSKKAFAALSDYARQKKAGKDPVFYRDVLPDDDGIDCWEYSDIAKSAKGKHIS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]