| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is yhjE [H]
Identifier: 154248594
GI number: 154248594
Start: 5177786
End: 5179672
Strand: Direct
Name: yhjE [H]
Synonym: Xaut_4675
Alternate gene names: 154248594
Gene position: 5177786-5179672 (Clockwise)
Preceding gene: 154248591
Following gene: 154248595
Centisome position: 97.53
GC content: 65.98
Gene sequence:
>1887_bases GTGTGCGGCTGGCATCCACGACCGATACATGTGGGACGCCCATCGCTCAGAGCCCGAACGCTAGTGCGAGTCTGGCCCCT GGGTCAAACCAGATTTTGCCTTGATCTGGGGCCTCACACCCACCTCCATACTACATATGGTGGCGCCCATCAGGTTATCA AATCCCTAATGGGCCTTTACCCGGCTCGGTTTTCGCGTCTTCGTGACCGGCCACCCGACGCGGTGCGCGAAGTGGCGATC ATCACCGTCATCCACAGGCTGGATACAGACGGGTGCGCGGCGGCTCGAACGCAACCAAAGTCCGTTCGGGCGACGGTGTC ATGCGCATCGCACATGCCCACCATGCAGAATGCGGTATCCGCGTGCGTGGCAAAGCCGTGCGCAATAATCTATCAAGCGG CCTCTTCCCTCGCGCGCGGGACACTTACGCCTCCCCCGCATCGCGATAGATTATTGCCCAACCCTCCGGCGCCGTGGCGC CCGTGGAGACCGGGCACGGAGCGAGGCGATCCGGGACAGTTGGAACAGGTCATGTCATCCACCACCGTCGTCGCGTCCGC CGACGAACATCACGCCGTCAACCCGCGCTCCCGCGTCATCCTGGCGAGCCTCGTTGGCACTACCATCGAGTTCTACGACT TCTACGTCTATGCCACGGCCGCGGTGCTGGTGTTCCCGCACCTGTTCTTCCCGGCCAGCGATCCGACCACCGCCTTGCTC GCCTCGTTCGCGGTGTTCGGCGCGGCCATGGTGGCTCGGCCGCTGGGCGCCATCTTCTTCGGCCATCTCGGTGACAAGAA GGGCCGCAAGATCACGTTGGTGGGCGCCCTCCTGACCATGGGCATCGCCACCTTCCTCATCGGCCTCCTGCCGACCTACG CCACCGCCGGCTGGCTGGCCCCGGCGCTGCTGGTGGTGCTGCGCCTCGCGCAGGGCTTCGCGCTCGGCGGCGAATGGAGC GGCGCGGCGCTGGTAGCCACCGAGAACGCCCCTCCCGGCAAGCGCGCGGTCTACGGCACCTTCCCGCAGCTCGGCGCGCC CATCGGCTTCATCATCGCCAATGGCCTGTTCCTCATCATCGCGGCGCTGATGCCGTCCTCCGATCCCTCGCGGCCGTCCG ACGCCTTCCTGTCGTGGGGCTGGCGCATCCCGTTCCTGTTCTCGGCGGTGATGGTGATCGTCGGCCTGTGGGTCCGCTTC AGCCTGGTGGAGAGCAAGGCCTTCGAGAACACGGTGAAGCGGGGCGGGATCCAGAAGGTGCCGCTGACGGCCGCCTTCAA GACCCACTGGCGCGAGCTGATCCTCGGCACCTTCTACATGCTAGCCACCTACGTGCTGTTTTACCTGATGACCACCTTCT CGCTGAGCTATGGCCGCGCCGCCACCACGGCCGCACTGCCGGGCCTCGGCTACGACTACCGCACCTTCGTGCTGATGATG ATCTGCGGCGTGGTGTTCTTCGGCATCTTCACCATGGTGTCCGGCCCCTGGGCCGACCGCTGGGGCCGCCGTCGCACCCT CATCGCCATCACCTCGGCCATCGCCGTGTTCGGCCTGCTGTGGGTGCCCATCCTGTCCGCCGGCTTCGTGGGCGTCATGG CGTGGCTCATCATCGGCTTCACGCTGATGGGCCTCACCTTCGGCCCCATGGGCGCGCTGCTGCCGGAGCTGTTCCCGGCC AACGTGCGCTATACCGGCTCGGGCATCTCCTACAACGTGTCGTCCATCCTCGGCGCAGCGGTGGCCCCGTTCATCGCGGT GGCGCTGTGGAGCTATGGCGGCGGCAGCCCGTTCTGGGTCGGCGTCTACCTGACCGTGATGGCGCTGTTCACCCTGGTGG CGCTGATTCTCGGCAAGGAAACCCGCGACATCAACATCCACCACTGA
Upstream 100 bases:
>100_bases CGGGCCGATCATTCTAAATGATGAATGTGGCAGTCGTGACGATACGTCTGGCACGGCGCAGGACGTCGCGCCGTGACGGT TCGCAGAACAGGGGTTCTGG
Downstream 100 bases:
>100_bases GGCGAGGGGGCTCAACGCCCCTCCTTGATCGATGTGGGGGCTTACGCCCCGACTTGATCCGTGTTGCGGGGCTTAACGCC CCGCCCTGAACCGTGTTGGG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 628; Mature: 628
Protein sequence:
>628_residues MCGWHPRPIHVGRPSLRARTLVRVWPLGQTRFCLDLGPHTHLHTTYGGAHQVIKSLMGLYPARFSRLRDRPPDAVREVAI ITVIHRLDTDGCAAARTQPKSVRATVSCASHMPTMQNAVSACVAKPCAIIYQAASSLARGTLTPPPHRDRLLPNPPAPWR PWRPGTERGDPGQLEQVMSSTTVVASADEHHAVNPRSRVILASLVGTTIEFYDFYVYATAAVLVFPHLFFPASDPTTALL ASFAVFGAAMVARPLGAIFFGHLGDKKGRKITLVGALLTMGIATFLIGLLPTYATAGWLAPALLVVLRLAQGFALGGEWS GAALVATENAPPGKRAVYGTFPQLGAPIGFIIANGLFLIIAALMPSSDPSRPSDAFLSWGWRIPFLFSAVMVIVGLWVRF SLVESKAFENTVKRGGIQKVPLTAAFKTHWRELILGTFYMLATYVLFYLMTTFSLSYGRAATTAALPGLGYDYRTFVLMM ICGVVFFGIFTMVSGPWADRWGRRRTLIAITSAIAVFGLLWVPILSAGFVGVMAWLIIGFTLMGLTFGPMGALLPELFPA NVRYTGSGISYNVSSILGAAVAPFIAVALWSYGGGSPFWVGVYLTVMALFTLVALILGKETRDINIHH
Sequences:
>Translated_628_residues MCGWHPRPIHVGRPSLRARTLVRVWPLGQTRFCLDLGPHTHLHTTYGGAHQVIKSLMGLYPARFSRLRDRPPDAVREVAI ITVIHRLDTDGCAAARTQPKSVRATVSCASHMPTMQNAVSACVAKPCAIIYQAASSLARGTLTPPPHRDRLLPNPPAPWR PWRPGTERGDPGQLEQVMSSTTVVASADEHHAVNPRSRVILASLVGTTIEFYDFYVYATAAVLVFPHLFFPASDPTTALL ASFAVFGAAMVARPLGAIFFGHLGDKKGRKITLVGALLTMGIATFLIGLLPTYATAGWLAPALLVVLRLAQGFALGGEWS GAALVATENAPPGKRAVYGTFPQLGAPIGFIIANGLFLIIAALMPSSDPSRPSDAFLSWGWRIPFLFSAVMVIVGLWVRF SLVESKAFENTVKRGGIQKVPLTAAFKTHWRELILGTFYMLATYVLFYLMTTFSLSYGRAATTAALPGLGYDYRTFVLMM ICGVVFFGIFTMVSGPWADRWGRRRTLIAITSAIAVFGLLWVPILSAGFVGVMAWLIIGFTLMGLTFGPMGALLPELFPA NVRYTGSGISYNVSSILGAAVAPFIAVALWSYGGGSPFWVGVYLTVMALFTLVALILGKETRDINIHH >Mature_628_residues MCGWHPRPIHVGRPSLRARTLVRVWPLGQTRFCLDLGPHTHLHTTYGGAHQVIKSLMGLYPARFSRLRDRPPDAVREVAI ITVIHRLDTDGCAAARTQPKSVRATVSCASHMPTMQNAVSACVAKPCAIIYQAASSLARGTLTPPPHRDRLLPNPPAPWR PWRPGTERGDPGQLEQVMSSTTVVASADEHHAVNPRSRVILASLVGTTIEFYDFYVYATAAVLVFPHLFFPASDPTTALL ASFAVFGAAMVARPLGAIFFGHLGDKKGRKITLVGALLTMGIATFLIGLLPTYATAGWLAPALLVVLRLAQGFALGGEWS GAALVATENAPPGKRAVYGTFPQLGAPIGFIIANGLFLIIAALMPSSDPSRPSDAFLSWGWRIPFLFSAVMVIVGLWVRF SLVESKAFENTVKRGGIQKVPLTAAFKTHWRELILGTFYMLATYVLFYLMTTFSLSYGRAATTAALPGLGYDYRTFVLMM ICGVVFFGIFTMVSGPWADRWGRRRTLIAITSAIAVFGLLWVPILSAGFVGVMAWLIIGFTLMGLTFGPMGALLPELFPA NVRYTGSGISYNVSSILGAAVAPFIAVALWSYGGGSPFWVGVYLTVMALFTLVALILGKETRDINIHH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=449, Percent_Identity=54.1202672605791, Blast_Score=402, Evalue=1e-113, Organism=Escherichia coli, GI1788292, Length=460, Percent_Identity=36.5217391304348, Blast_Score=249, Evalue=3e-67, Organism=Escherichia coli, GI1790550, Length=437, Percent_Identity=31.5789473684211, Blast_Score=207, Evalue=1e-54, Organism=Escherichia coli, GI1788942, Length=477, Percent_Identity=31.6561844863732, Blast_Score=164, Evalue=1e-41, Organism=Escherichia coli, GI87082404, Length=453, Percent_Identity=24.2825607064018, Blast_Score=74, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 67947; Mature: 67947
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: PS00024 HEMOPEXIN ; PS00359 RIBOSOMAL_L11 ; PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCGWHPRPIHVGRPSLRARTLVRVWPLGQTRFCLDLGPHTHLHTTYGGAHQVIKSLMGLY CCCCCCCCCCCCCCCHHHHHEEEEECCCCCEEEEECCCCCEEECCCCCHHHHHHHHHHHH PARFSRLRDRPPDAVREVAIITVIHRLDTDGCAAARTQPKSVRATVSCASHMPTMQNAVS HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHCCCHHHHHHH ACVAKPCAIIYQAASSLARGTLTPPPHRDRLLPNPPAPWRPWRPGTERGDPGQLEQVMSS HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH TTVVASADEHHAVNPRSRVILASLVGTTIEFYDFYVYATAAVLVFPHLFFPASDPTTALL HHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH ASFAVFGAAMVARPLGAIFFGHLGDKKGRKITLVGALLTMGIATFLIGLLPTYATAGWLA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH PALLVVLRLAQGFALGGEWSGAALVATENAPPGKRAVYGTFPQLGAPIGFIIANGLFLII HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEECCHHHCCCHHHHHHHHHHHHH AALMPSSDPSRPSDAFLSWGWRIPFLFSAVMVIVGLWVRFSLVESKAFENTVKRGGIQKV HHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PLTAAFKTHWRELILGTFYMLATYVLFYLMTTFSLSYGRAATTAALPGLGYDYRTFVLMM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHH ICGVVFFGIFTMVSGPWADRWGRRRTLIAITSAIAVFGLLWVPILSAGFVGVMAWLIIGF HHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLMGLTFGPMGALLPELFPANVRYTGSGISYNVSSILGAAVAPFIAVALWSYGGGSPFWV HHHHHHHCHHHHHHHHHCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHH GVYLTVMALFTLVALILGKETRDINIHH HHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MCGWHPRPIHVGRPSLRARTLVRVWPLGQTRFCLDLGPHTHLHTTYGGAHQVIKSLMGLY CCCCCCCCCCCCCCCHHHHHEEEEECCCCCEEEEECCCCCEEECCCCCHHHHHHHHHHHH PARFSRLRDRPPDAVREVAIITVIHRLDTDGCAAARTQPKSVRATVSCASHMPTMQNAVS HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHCCCHHHHHHH ACVAKPCAIIYQAASSLARGTLTPPPHRDRLLPNPPAPWRPWRPGTERGDPGQLEQVMSS HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH TTVVASADEHHAVNPRSRVILASLVGTTIEFYDFYVYATAAVLVFPHLFFPASDPTTALL HHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH ASFAVFGAAMVARPLGAIFFGHLGDKKGRKITLVGALLTMGIATFLIGLLPTYATAGWLA HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH PALLVVLRLAQGFALGGEWSGAALVATENAPPGKRAVYGTFPQLGAPIGFIIANGLFLII HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEECCHHHCCCHHHHHHHHHHHHH AALMPSSDPSRPSDAFLSWGWRIPFLFSAVMVIVGLWVRFSLVESKAFENTVKRGGIQKV HHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PLTAAFKTHWRELILGTFYMLATYVLFYLMTTFSLSYGRAATTAALPGLGYDYRTFVLMM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHH ICGVVFFGIFTMVSGPWADRWGRRRTLIAITSAIAVFGLLWVPILSAGFVGVMAWLIIGF HHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLMGLTFGPMGALLPELFPANVRYTGSGISYNVSSILGAAVAPFIAVALWSYGGGSPFWV HHHHHHHCHHHHHHHHHCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHH GVYLTVMALFTLVALILGKETRDINIHH HHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]