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The map label for this gene is psd

Identifier: 154248581

GI number: 154248581

Start: 5153558

End: 5154259

Strand: Reverse

Name: psd

Synonym: Xaut_4662

Alternate gene names: 154248581

Gene position: 5154259-5153558 (Counterclockwise)

Preceding gene: 154248582

Following gene: 154248580

Centisome position: 97.09

GC content: 68.95

Gene sequence:

>702_bases
TTGTCCGTCGTCACATCCATCCGCAAGTCGCTGGTTCCCATCCATCGGGAAGGCTACCCCTTCATCGCCATCGCGGTGGT
GATCGCGCTCGGGCTCATGGTCTTCTCCACCTTCCTCGGCATGATCGGGGTGGGGCTGGCCATCTGGACCGCCCTGTTCT
TCCGCGATCCGCCGCGGGTGACGCCGGTGCGCGACGGGCTGGTGGTGGCGCCGGCAGACGGGCGCATCTCCCAGGTGGGC
CTCGCCCGGCCGCCGCGCGAGCTGGACCTGTCCGACGAGCCGCTGCTGCGCGTCTCCATCTTCATGAACGTGTTCAACGT
GCACGTGAACCGGGCCCCGGTGACCGGCCGCATCGAGCGCCTCGCCTACAAGCCGGGCCTGTTCCTCAACGCCGACCTGG
ACAAGGCGAGCGAGGACAATGAGCGCAACGGCCTCGTGATCTCCACGCCCCTGTGCCGCGTGGGCGTGGTGCAGATCGCC
GGCCTCATCGCCCGCCGCATCGTCTCCTTCGTGCGGGAGGGCGAATCGATCGGCGTCGGCGAGCGCTTCGGCCTGATCCG
CTTCGGCTCGCGGGTGGATGTCTATCTGCCGGTGGGCACGCGGGTTCTGGTGTCCGAAGGCCAGCTGACGGTGGCCGGCG
AGACGGTTCTGTGCGATCTCTCCGCCCAGCAGCCGCGCGAGACGGCCTACCGGGTGAGCTGA

Upstream 100 bases:

>100_bases
CGGGCCACGACGAGGTGGCGGCGGGCCGCATTTGACGGCTGGCCGCGCCCTCACTACCTCTTGCCCGGTTCGGCGCCGGT
GCGGCGCTCTGGAGGCCGTG

Downstream 100 bases:

>100_bases
TGGAAACGCCCTTTCCCCCGTTCGATCCGGAAGGCCGGCCGCGCCCCCGCTTCGGCCGCCTCGGCCGGGTGCCGCTGCGG
GTGCTGTTGCCCAATCTGGT

Product: phosphatidylserine decarboxylase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSVVTSIRKSLVPIHREGYPFIAIAVVIALGLMVFSTFLGMIGVGLAIWTALFFRDPPRVTPVRDGLVVAPADGRISQVG
LARPPRELDLSDEPLLRVSIFMNVFNVHVNRAPVTGRIERLAYKPGLFLNADLDKASEDNERNGLVISTPLCRVGVVQIA
GLIARRIVSFVREGESIGVGERFGLIRFGSRVDVYLPVGTRVLVSEGQLTVAGETVLCDLSAQQPRETAYRVS

Sequences:

>Translated_233_residues
MSVVTSIRKSLVPIHREGYPFIAIAVVIALGLMVFSTFLGMIGVGLAIWTALFFRDPPRVTPVRDGLVVAPADGRISQVG
LARPPRELDLSDEPLLRVSIFMNVFNVHVNRAPVTGRIERLAYKPGLFLNADLDKASEDNERNGLVISTPLCRVGVVQIA
GLIARRIVSFVREGESIGVGERFGLIRFGSRVDVYLPVGTRVLVSEGQLTVAGETVLCDLSAQQPRETAYRVS
>Mature_232_residues
SVVTSIRKSLVPIHREGYPFIAIAVVIALGLMVFSTFLGMIGVGLAIWTALFFRDPPRVTPVRDGLVVAPADGRISQVGL
ARPPRELDLSDEPLLRVSIFMNVFNVHVNRAPVTGRIERLAYKPGLFLNADLDKASEDNERNGLVISTPLCRVGVVQIAG
LIARRIVSFVREGESIGVGERFGLIRFGSRVDVYLPVGTRVLVSEGQLTVAGETVLCDLSAQQPRETAYRVS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_XANP2 (A7IPD6)

Other databases:

- EMBL:   CP000781
- RefSeq:   YP_001419539.1
- STRING:   A7IPD6
- GeneID:   5425097
- GenomeReviews:   CP000781_GR
- KEGG:   xau:Xaut_4662
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   CLSK980372
- BioCyc:   XAUT78245:XAUT_4662-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25379; Mature: 25248

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVTSIRKSLVPIHREGYPFIAIAVVIALGLMVFSTFLGMIGVGLAIWTALFFRDPPRV
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPVRDGLVVAPADGRISQVGLARPPRELDLSDEPLLRVSIFMNVFNVHVNRAPVTGRIER
CCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCHHHHH
LAYKPGLFLNADLDKASEDNERNGLVISTPLCRVGVVQIAGLIARRIVSFVREGESIGVG
HHCCCCEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ERFGLIRFGSRVDVYLPVGTRVLVSEGQLTVAGETVLCDLSAQQPRETAYRVS
CCCCEEEECCEEEEEECCCCEEEEECCEEEEECCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SVVTSIRKSLVPIHREGYPFIAIAVVIALGLMVFSTFLGMIGVGLAIWTALFFRDPPRV
CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPVRDGLVVAPADGRISQVGLARPPRELDLSDEPLLRVSIFMNVFNVHVNRAPVTGRIER
CCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCHHHHH
LAYKPGLFLNADLDKASEDNERNGLVISTPLCRVGVVQIAGLIARRIVSFVREGESIGVG
HHCCCCEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ERFGLIRFGSRVDVYLPVGTRVLVSEGQLTVAGETVLCDLSAQQPRETAYRVS
CCCCEEEECCEEEEEECCCCEEEEECCEEEEECCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA