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The map label for this gene is yciR [C]

Identifier: 154248534

GI number: 154248534

Start: 5099765

End: 5102041

Strand: Direct

Name: yciR [C]

Synonym: Xaut_4615

Alternate gene names: 154248534

Gene position: 5099765-5102041 (Clockwise)

Preceding gene: 154248525

Following gene: 154248555

Centisome position: 96.06

GC content: 67.41

Gene sequence:

>2277_bases
GTGATCCTCGCCAGCGTCCTGCTTCTGCTCGGGGGGATGGTCGCATACAGGCTGGTCCGGAAACCGCGCGCGCGCGCAGA
TGGGCGTGAACCCGAATCCGGTAAACCCGCAACCTTCGTCCCCGCCGCGGCCGCTGCCTCTCTGGCGGCCCCGCTCGTGT
CCGGCGCGACGGGCCCGGGACCTGCCAGCAGCGGCGACAGCATGGCCCTGCGGGAGAGCGAGGAACGCTTCGATCTGGCG
GCCAGGGGGTCGGACCAGGGGGTATTCGACATCCATGTGGGCCGCAGCCTGTATCTGTCGCCCCGTGCCCGTGACATCCT
CGGCATCGCCCCCAAAGCCCCCGTCGACATACGGCGGACCTTTCGCCAGATGCTGCGCGGCGCGGACCGCCGAAAGGTCG
CCGCCGTCCGGAAGGATCTTGTCCGCGGCGGCAGCGACGTCGATCTCGACATCCGGATTTCCCGGCCCGACGGCGCCAGT
CGCGATGTGCGGTGGCGCGGCCTCGCCACCCGTGACGGCGATGGCGCCGTGACCCGCGTGGTGGGCATGATCACGGATGT
GACGGCGCAGAAGCAGAGCGAGCGCCACCTGCGCCTTGCCGCCGCTGTGTTCGCCAGCGCCCACGACGGACTGGTGGTGA
CCGATCTCAACGCGGTGGTTTCCGCCGTAAACCCGGCGTTTTCGCAGATCACCGGCTATTGCGAGGCGGAGATCCTCGGC
CGGTCCATGCGCACCATGCATTCCGGCCGTCACGACCGCGAATTCTATCGCGGCATGTGGGGTGCTCTCACCTCGACAGG
CAGCTGGCACGGCGAGATCTGGAACCGCCGCAAGAACGGCGAGATCTTCCTCCAGCAGCTCAGCATCCGCACCGTCTTTG
ACGAGAAGGGCAAGCCGCAGAACTATGTTGGCGCCTTCCAGGACATCACCCGGATCAAGCATTCGGAATTCGAGCTCGAC
CGGATCGCCCATTACGATCCCCTCACCGACCTGCCCAACCGCACCCTGCTCGCATCCCTCCTCGACCTTGCTGTCAGCCG
GGCCGGCAAGACCTGCGCCGTGCTGTTCCTGGACATCGACCGCTTCAAGACCGTCAACGACAGCCTCGGCCATATTGCCG
GCGATGCGGTGCTCAAGGCGGCGGCCGATCGCATCCGCGCCGCGCTTGATGCCGATGCCACGCTCGGGCACTACGGCGCC
GACGAGTTTGTGGTGATCCTTGAGGAGATCGAGGGGCCGCAGGATGCGGCACTCGCCGCATCGCGCCTCATCGACGAACT
GGCGCGGCCGTTCACGATCAATGGCGGCGAGATCTATCTGGGCGCCAGCGTGGGCATCAGCCTCCATCCGCTCGACGCCG
ACGATGCCGCCCAGCTGCTCCAGCATGCCAACACAGCTCTGGCCGAGGCGAAGGCACAGGGGCGCGGGATCTATTCTTTC
TACACCCAGGCACTCACCCGCAGCGCCCGGGTCCGCATGGAGATGGAAGCGGACCTCCGGCGCGGCCTCGTGCGCGAGGA
GTTCCGCCTGAACTTCCAGCCGGTGGTGGACCTGGCCAACGGGCGCATCGCGGGCGCGGAGGCGCTGGTGCGCTGGCAGA
GCCCGGTCCATGGCCTTGTCCTGCCCAACCGCTTTATTCCGCTCGCCGAGGAAACCGGCCTCATCGAGCCCCTGGGCGAC
TGGGTGCTGGAGGAGGCCTGCCAGCAGATGGCCAAATGGACCGCTGCGGGGGCCGATCTCGATTTCATCGCCGTGAACCT
GTCGCCGCGGCAGTTTCAGCGTGGCACCCTCTGCGAGCGCATCGAAGAGGTGCTGCGCCGCACCGGCCTTCCCGCCGCGC
GGCTGGAGGTGGAAATCACCGAGAACGTGCTGTTCGGCGCTGTGGCGGCCGAACGCAAGCTGCGTGACATGCGCGACAGC
GGCGTGCGCATCGCGCTCGACGATTTCGGCACCGGCTATTCGTCACTGGCCTATCTCAAGCGCTTTCCCATTTCCAAGCT
GAAGATCGACCGCAGTTTCGTGCACGACCTGCCCCGCGCCGCCGACGCGGAAATTGCCACCGCCATCATCTCCATCGCCC
GTGCGCTCGGGCTCGATGTGGTGGCGGAGGGCATCGAGGCTCCCGAGCAATGCGCCTTCCTGAAGGAGCGCGGATGCGGC
TTTGGGCAGGGCTATCTGTTTGGCCGCCCGGTAACCAGCGAACGCTTCCTGCGTCTTGCGCTCCAGGGGCCGATCGCTAC
CGCCATGGCCCATCCCGGCAGCCCGCGGCTCCACTGA

Upstream 100 bases:

>100_bases
CCAGGGCCTTGCGGTCTTGGCCGCGTCGGCCAGCCCTGCGGCGGCGGCAGCGCTCTGGCAGGACGTAGCGGAACTTTCCC
ACTCGACCTCCCCTCAGGCC

Downstream 100 bases:

>100_bases
TCGCATCGGCCCCGGCAGCGGACCAAGGCCGCGGTGGCATGCTCAGGCGACGCAGGGGCGACGCCGACAGGCCGTGGTGC
CGTCTGGCTCGCCGGCCCCC

Product: PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 758; Mature: 758

Protein sequence:

>758_residues
MILASVLLLLGGMVAYRLVRKPRARADGREPESGKPATFVPAAAAASLAAPLVSGATGPGPASSGDSMALRESEERFDLA
ARGSDQGVFDIHVGRSLYLSPRARDILGIAPKAPVDIRRTFRQMLRGADRRKVAAVRKDLVRGGSDVDLDIRISRPDGAS
RDVRWRGLATRDGDGAVTRVVGMITDVTAQKQSERHLRLAAAVFASAHDGLVVTDLNAVVSAVNPAFSQITGYCEAEILG
RSMRTMHSGRHDREFYRGMWGALTSTGSWHGEIWNRRKNGEIFLQQLSIRTVFDEKGKPQNYVGAFQDITRIKHSEFELD
RIAHYDPLTDLPNRTLLASLLDLAVSRAGKTCAVLFLDIDRFKTVNDSLGHIAGDAVLKAAADRIRAALDADATLGHYGA
DEFVVILEEIEGPQDAALAASRLIDELARPFTINGGEIYLGASVGISLHPLDADDAAQLLQHANTALAEAKAQGRGIYSF
YTQALTRSARVRMEMEADLRRGLVREEFRLNFQPVVDLANGRIAGAEALVRWQSPVHGLVLPNRFIPLAEETGLIEPLGD
WVLEEACQQMAKWTAAGADLDFIAVNLSPRQFQRGTLCERIEEVLRRTGLPAARLEVEITENVLFGAVAAERKLRDMRDS
GVRIALDDFGTGYSSLAYLKRFPISKLKIDRSFVHDLPRAADAEIATAIISIARALGLDVVAEGIEAPEQCAFLKERGCG
FGQGYLFGRPVTSERFLRLALQGPIATAMAHPGSPRLH

Sequences:

>Translated_758_residues
MILASVLLLLGGMVAYRLVRKPRARADGREPESGKPATFVPAAAAASLAAPLVSGATGPGPASSGDSMALRESEERFDLA
ARGSDQGVFDIHVGRSLYLSPRARDILGIAPKAPVDIRRTFRQMLRGADRRKVAAVRKDLVRGGSDVDLDIRISRPDGAS
RDVRWRGLATRDGDGAVTRVVGMITDVTAQKQSERHLRLAAAVFASAHDGLVVTDLNAVVSAVNPAFSQITGYCEAEILG
RSMRTMHSGRHDREFYRGMWGALTSTGSWHGEIWNRRKNGEIFLQQLSIRTVFDEKGKPQNYVGAFQDITRIKHSEFELD
RIAHYDPLTDLPNRTLLASLLDLAVSRAGKTCAVLFLDIDRFKTVNDSLGHIAGDAVLKAAADRIRAALDADATLGHYGA
DEFVVILEEIEGPQDAALAASRLIDELARPFTINGGEIYLGASVGISLHPLDADDAAQLLQHANTALAEAKAQGRGIYSF
YTQALTRSARVRMEMEADLRRGLVREEFRLNFQPVVDLANGRIAGAEALVRWQSPVHGLVLPNRFIPLAEETGLIEPLGD
WVLEEACQQMAKWTAAGADLDFIAVNLSPRQFQRGTLCERIEEVLRRTGLPAARLEVEITENVLFGAVAAERKLRDMRDS
GVRIALDDFGTGYSSLAYLKRFPISKLKIDRSFVHDLPRAADAEIATAIISIARALGLDVVAEGIEAPEQCAFLKERGCG
FGQGYLFGRPVTSERFLRLALQGPIATAMAHPGSPRLH
>Mature_758_residues
MILASVLLLLGGMVAYRLVRKPRARADGREPESGKPATFVPAAAAASLAAPLVSGATGPGPASSGDSMALRESEERFDLA
ARGSDQGVFDIHVGRSLYLSPRARDILGIAPKAPVDIRRTFRQMLRGADRRKVAAVRKDLVRGGSDVDLDIRISRPDGAS
RDVRWRGLATRDGDGAVTRVVGMITDVTAQKQSERHLRLAAAVFASAHDGLVVTDLNAVVSAVNPAFSQITGYCEAEILG
RSMRTMHSGRHDREFYRGMWGALTSTGSWHGEIWNRRKNGEIFLQQLSIRTVFDEKGKPQNYVGAFQDITRIKHSEFELD
RIAHYDPLTDLPNRTLLASLLDLAVSRAGKTCAVLFLDIDRFKTVNDSLGHIAGDAVLKAAADRIRAALDADATLGHYGA
DEFVVILEEIEGPQDAALAASRLIDELARPFTINGGEIYLGASVGISLHPLDADDAAQLLQHANTALAEAKAQGRGIYSF
YTQALTRSARVRMEMEADLRRGLVREEFRLNFQPVVDLANGRIAGAEALVRWQSPVHGLVLPNRFIPLAEETGLIEPLGD
WVLEEACQQMAKWTAAGADLDFIAVNLSPRQFQRGTLCERIEEVLRRTGLPAARLEVEITENVLFGAVAAERKLRDMRDS
GVRIALDDFGTGYSSLAYLKRFPISKLKIDRSFVHDLPRAADAEIATAIISIARALGLDVVAEGIEAPEQCAFLKERGCG
FGQGYLFGRPVTSERFLRLALQGPIATAMAHPGSPRLH

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=557, Percent_Identity=33.9317773788151, Blast_Score=305, Evalue=6e-84,
Organism=Escherichia coli, GI87081921, Length=420, Percent_Identity=33.5714285714286, Blast_Score=241, Evalue=9e-65,
Organism=Escherichia coli, GI226510982, Length=428, Percent_Identity=31.0747663551402, Blast_Score=199, Evalue=5e-52,
Organism=Escherichia coli, GI1790496, Length=310, Percent_Identity=30.9677419354839, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1788502, Length=269, Percent_Identity=33.8289962825279, Blast_Score=154, Evalue=3e-38,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=34.4262295081967, Blast_Score=151, Evalue=2e-37,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=32.9268292682927, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081845, Length=256, Percent_Identity=35.15625, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=32.9113924050633, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1787055, Length=291, Percent_Identity=30.2405498281787, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI1788381, Length=678, Percent_Identity=25.5162241887906, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788849, Length=248, Percent_Identity=32.6612903225806, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082096, Length=195, Percent_Identity=34.3589743589744, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=34.7826086956522, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=31.3609467455621, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=31.9277108433735, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1787802, Length=159, Percent_Identity=30.188679245283, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=28.4916201117318, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=30.6818181818182, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=32.2784810126582, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82552; Mature: 82552

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILASVLLLLGGMVAYRLVRKPRARADGREPESGKPATFVPAAAAASLAAPLVSGATGPG
CHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCC
PASSGDSMALRESEERFDLAARGSDQGVFDIHVGRSLYLSPRARDILGIAPKAPVDIRRT
CCCCCCCCHHHCCHHHHHHHCCCCCCCEEEEEECCEEEECCCCCHHCCCCCCCCHHHHHH
FRQMLRGADRRKVAAVRKDLVRGGSDVDLDIRISRPDGASRDVRWRGLATRDGDGAVTRV
HHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHHHHH
VGMITDVTAQKQSERHLRLAAAVFASAHDGLVVTDLNAVVSAVNPAFSQITGYCEAEILG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCHHHHHHHCHHHHHHHH
RSMRTMHSGRHDREFYRGMWGALTSTGSWHGEIWNRRKNGEIFLQQLSIRTVFDEKGKPQ
HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEHHHHHHHHHCCCCCCH
NYVGAFQDITRIKHSEFELDRIAHYDPLTDLPNRTLLASLLDLAVSRAGKTCAVLFLDID
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEHH
RFKTVNDSLGHIAGDAVLKAAADRIRAALDADATLGHYGADEFVVILEEIEGPQDAALAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEECCCCCHHHHHHH
SRLIDELARPFTINGGEIYLGASVGISLHPLDADDAAQLLQHANTALAEAKAQGRGIYSF
HHHHHHHCCCEEECCCEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
YTQALTRSARVRMEMEADLRRGLVREEFRLNFQPVVDLANGRIAGAEALVRWQSPVHGLV
HHHHHHHHHHHEEHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEECHHHHHHHCCCCCCEE
LPNRFIPLAEETGLIEPLGDWVLEEACQQMAKWTAAGADLDFIAVNLSPRQFQRGTLCER
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCHHHHH
IEEVLRRTGLPAARLEVEITENVLFGAVAAERKLRDMRDSGVRIALDDFGTGYSSLAYLK
HHHHHHHCCCCHHEEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
RFPISKLKIDRSFVHDLPRAADAEIATAIISIARALGLDVVAEGIEAPEQCAFLKERGCG
HCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
FGQGYLFGRPVTSERFLRLALQGPIATAMAHPGSPRLH
CCCCCEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCCC
>Mature Secondary Structure
MILASVLLLLGGMVAYRLVRKPRARADGREPESGKPATFVPAAAAASLAAPLVSGATGPG
CHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCC
PASSGDSMALRESEERFDLAARGSDQGVFDIHVGRSLYLSPRARDILGIAPKAPVDIRRT
CCCCCCCCHHHCCHHHHHHHCCCCCCCEEEEEECCEEEECCCCCHHCCCCCCCCHHHHHH
FRQMLRGADRRKVAAVRKDLVRGGSDVDLDIRISRPDGASRDVRWRGLATRDGDGAVTRV
HHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHHHHH
VGMITDVTAQKQSERHLRLAAAVFASAHDGLVVTDLNAVVSAVNPAFSQITGYCEAEILG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCHHHHHHHCHHHHHHHH
RSMRTMHSGRHDREFYRGMWGALTSTGSWHGEIWNRRKNGEIFLQQLSIRTVFDEKGKPQ
HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEHHHHHHHHHCCCCCCH
NYVGAFQDITRIKHSEFELDRIAHYDPLTDLPNRTLLASLLDLAVSRAGKTCAVLFLDID
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEHH
RFKTVNDSLGHIAGDAVLKAAADRIRAALDADATLGHYGADEFVVILEEIEGPQDAALAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEECCCCCHHHHHHH
SRLIDELARPFTINGGEIYLGASVGISLHPLDADDAAQLLQHANTALAEAKAQGRGIYSF
HHHHHHHCCCEEECCCEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
YTQALTRSARVRMEMEADLRRGLVREEFRLNFQPVVDLANGRIAGAEALVRWQSPVHGLV
HHHHHHHHHHHEEHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEECHHHHHHHCCCCCCEE
LPNRFIPLAEETGLIEPLGDWVLEEACQQMAKWTAAGADLDFIAVNLSPRQFQRGTLCER
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCHHHHH
IEEVLRRTGLPAARLEVEITENVLFGAVAAERKLRDMRDSGVRIALDDFGTGYSSLAYLK
HHHHHHHCCCCHHEEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
RFPISKLKIDRSFVHDLPRAADAEIATAIISIARALGLDVVAEGIEAPEQCAFLKERGCG
HCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
FGQGYLFGRPVTSERFLRLALQGPIATAMAHPGSPRLH
CCCCCEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]