Click here to switch to the map view.

The map label for this gene is yusT [H]

Identifier: 154248484

GI number: 154248484

Start: 5044629

End: 5045459

Strand: Reverse

Name: yusT [H]

Synonym: Xaut_4564

Alternate gene names: 154248484

Gene position: 5045459-5044629 (Counterclockwise)

Preceding gene: 154248489

Following gene: 154248483

Centisome position: 95.04

GC content: 71.84

Gene sequence:

>831_bases
ATGATGGATATCCGCGACATCCAGTTCCTCCAGGCGGTGGCCGAGACCGGCAGCATCACGCGCGCGGCGGAGCGGCTCGG
CTGCGTGCAGTCCAATGTCACCGCGCGCCTGAAGAAGCTGGAGGACCGCCTGGGCCAGAAGCTGGTGGCGCGCATGGACG
GGCGCATGGTGCCCACCGCCGCCGGTAGCCTCGCCCTCGACTATGGCGCGCGCATCGTCAACCTCTCCACCGAGGCGGAG
GCGCGCCTCAAGGCCTCGGCGCAGGACTGGCCGCCCCTGCGCCTCGGCACCATGGAGACGACGGCCGCGGTGCGCCTGCC
CCCGGTGCTGAAGCGCATCCGCGACACCCTCTCCCCCCTGCGCCTGACCCTGAAGACCGGCACCAGCGGCGAGCTGATGG
CGGGCCTGCGGCGCGGGGCCTTCGACCTCGTCTTCGTCGCCGAGGATATGGCGGACGATCGCTTCGCCTCGCAGCCGCTG
TGGAGCGAGCGGCTGGTGGAGGTGTTGCCCAAGGCGCGGCCCAACGGGACGCCGCCGGAAAGCACGGCCATCGTGTTCCG
GGAAGGGTGCTGCTACCGGGAGCGCTGCCGCACGGTGCTGGGCGACCTGCCCATGCTGGAACTCGGCACGCTGGACGGCA
TCATCGGCTGTGTTGCCGCCGGGCTCGGTCGCACGTTGCTGCCGGAGGCGGCGGTGGAGCGCTGGCGCTCCCTGGGCGAG
ATCGAGACCCGCCCCATCCCGGGGCCGGATGTGCGCACTTTGGCGGTCTGGCATGCCGGCAGCCCGTCGCTTCGTTCCAT
CGCGGCGGTGGTGGCGCTCGCTTCAGCCTGA

Upstream 100 bases:

>100_bases
GTCGCTTGGGTCATGGCGGGCCTCCTTCGCTCTTTCGCCCATTATGGCCCATGCGAGTTTCATTGAAATTGAAACATTCT
GATATTACTGTTCACTTCTG

Downstream 100 bases:

>100_bases
GCCTCGCGGGATCGTGTTCGGCCGGGTGTAACCGGTGGGACCGATCGGACGGAAACCATCCGTAGAACCATCAGGGGCTC
GCCGGCGTTATCGCCTTGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MMDIRDIQFLQAVAETGSITRAAERLGCVQSNVTARLKKLEDRLGQKLVARMDGRMVPTAAGSLALDYGARIVNLSTEAE
ARLKASAQDWPPLRLGTMETTAAVRLPPVLKRIRDTLSPLRLTLKTGTSGELMAGLRRGAFDLVFVAEDMADDRFASQPL
WSERLVEVLPKARPNGTPPESTAIVFREGCCYRERCRTVLGDLPMLELGTLDGIIGCVAAGLGRTLLPEAAVERWRSLGE
IETRPIPGPDVRTLAVWHAGSPSLRSIAAVVALASA

Sequences:

>Translated_276_residues
MMDIRDIQFLQAVAETGSITRAAERLGCVQSNVTARLKKLEDRLGQKLVARMDGRMVPTAAGSLALDYGARIVNLSTEAE
ARLKASAQDWPPLRLGTMETTAAVRLPPVLKRIRDTLSPLRLTLKTGTSGELMAGLRRGAFDLVFVAEDMADDRFASQPL
WSERLVEVLPKARPNGTPPESTAIVFREGCCYRERCRTVLGDLPMLELGTLDGIIGCVAAGLGRTLLPEAAVERWRSLGE
IETRPIPGPDVRTLAVWHAGSPSLRSIAAVVALASA
>Mature_276_residues
MMDIRDIQFLQAVAETGSITRAAERLGCVQSNVTARLKKLEDRLGQKLVARMDGRMVPTAAGSLALDYGARIVNLSTEAE
ARLKASAQDWPPLRLGTMETTAAVRLPPVLKRIRDTLSPLRLTLKTGTSGELMAGLRRGAFDLVFVAEDMADDRFASQPL
WSERLVEVLPKARPNGTPPESTAIVFREGCCYRERCRTVLGDLPMLELGTLDGIIGCVAAGLGRTLLPEAAVERWRSLGE
IETRPIPGPDVRTLAVWHAGSPSLRSIAAVVALASA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787806, Length=271, Percent_Identity=30.9963099630996, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790399, Length=284, Percent_Identity=28.169014084507, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082132, Length=290, Percent_Identity=27.2413793103448, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788887, Length=294, Percent_Identity=27.2108843537415, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=27.2108843537415, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788481, Length=278, Percent_Identity=26.2589928057554, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 29852; Mature: 29852

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDIRDIQFLQAVAETGSITRAAERLGCVQSNVTARLKKLEDRLGQKLVARMDGRMVPTA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AGSLALDYGARIVNLSTEAEARLKASAQDWPPLRLGTMETTAAVRLPPVLKRIRDTLSPL
CCCHHHHCCCEEEEECCHHHHHHHCCCCCCCCEEECCCCHHHHEECCHHHHHHHHHHHHH
RLTLKTGTSGELMAGLRRGAFDLVFVAEDMADDRFASQPLWSERLVEVLPKARPNGTPPE
EEEEECCCCHHHHHHHHCCCEEEEEEECHHCCHHHHCCCCHHHHHHHHHCCCCCCCCCCC
STAIVFREGCCYRERCRTVLGDLPMLELGTLDGIIGCVAAGLGRTLLPEAAVERWRSLGE
CCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
IETRPIPGPDVRTLAVWHAGSPSLRSIAAVVALASA
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MMDIRDIQFLQAVAETGSITRAAERLGCVQSNVTARLKKLEDRLGQKLVARMDGRMVPTA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AGSLALDYGARIVNLSTEAEARLKASAQDWPPLRLGTMETTAAVRLPPVLKRIRDTLSPL
CCCHHHHCCCEEEEECCHHHHHHHCCCCCCCCEEECCCCHHHHEECCHHHHHHHHHHHHH
RLTLKTGTSGELMAGLRRGAFDLVFVAEDMADDRFASQPLWSERLVEVLPKARPNGTPPE
EEEEECCCCHHHHHHHHCCCEEEEEEECHHCCHHHHCCCCHHHHHHHHHCCCCCCCCCCC
STAIVFREGCCYRERCRTVLGDLPMLELGTLDGIIGCVAAGLGRTLLPEAAVERWRSLGE
CCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
IETRPIPGPDVRTLAVWHAGSPSLRSIAAVVALASA
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]